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Eizenga, Jordan M
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1

Optimal gap-affine alignment in O(s) space:

Marco-Sola, Santiago ; Eizenga, Jordan M ; Guarracino, Andrea...
Bioinformatics.  39 (2023)  2 - p. , 2023
Link: https://doi.org/10.1093/..
 
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2

Pangenome graph construction from genome alignments with Mi..:

Hickey, Glenn ; Monlong, Jean ; Ebler, Jana...
Nature Biotechnology.  , 2023
Link: https://doi.org/10.1038/..
 
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3

Haplotype-aware pantranscriptome analyses using spliced pan..:

Sibbesen, Jonas A. ; Eizenga, Jordan M. ; Novak, Adam M....
Nature Methods.  20 (2023)  2 - p. 239-247 , 2023
Link: https://doi.org/10.1038/..
 
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4

Pan-conserved segment tags identify ultra-conserved sequenc..:

Lee, HoJoon ; Greer, Stephanie U. ; Pavlichin, Dmitri S....
Cell Reports Methods.  3 (2023)  8 - p. 100543 , 2023
Link: https://doi.org/10.1016/..
 
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5

A draft human pangenome reference:

Liao, Wen-Wei ; Asri, Mobin ; Ebler, Jana...
Nature.  617 (2023)  7960 - p. 312-324 , 2023
Link: https://doi.org/10.1038/..
 
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6

Haplotype-aware variant calling with PEPPER-Margin-DeepVari..:

Shafin, Kishwar ; Pesout, Trevor ; Chang, Pi-Chuan...
Nature Methods.  18 (2021)  11 - p. 1322-1332 , 2021
Link: https://doi.org/10.1038/..
 
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7

Walk-Preserving Transformation of Overlapped Sequence Graph..:

, In: Lecture Notes in Computer Science; Connecting with Computability,
Eizenga, Jordan M. ; Lorig-Roach, Ryan ; Meredith, Melissa M.. - p. 169-177 , 2021
Link: https://doi.org/10.1007/..
 
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8

Pangenomics enables genotyping of known structural variants..:

Sirén, Jouni ; Monlong, Jean ; Chang, Xian...
Science.  374 (2021)  6574 - p. , 2021
Link: https://doi.org/10.1126/..
 
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9

Conserved novel ORFs in the mitochondrial genome of the cte..:

Schultz, Darrin T. ; Eizenga, Jordan M. ; Corbett-Detig, Russell B....
PeerJ.  8 (2020)  - p. e8356 , 2020
Link: https://doi.org/10.7717/..
 
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10

Variation graph toolkit improves read mapping by representi..:

Garrison, Erik ; Sirén, Jouni ; Novak, Adam M...
Nature Biotechnology.  36 (2018)  9 - p. 875-879 , 2018
Link: https://doi.org/10.1038/..
 
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11

Genome graphs and the evolution of genome inference:

Paten, Benedict ; Novak, Adam M. ; Eizenga, Jordan M..
Genome Research.  27 (2017)  5 - p. 665-676 , 2017
Link: https://doi.org/10.1101/..
 
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12

A phylogenetic approach for haplotype analysis of sequence ..:

Vohr, Samuel H. ; Gordon, Rachel ; Eizenga, Jordan M....
Forensic Science International: Genetics.  30 (2017)  - p. 93-105 , 2017
Link: https://doi.org/10.1016/..
 
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13

Optimal gap-affine alignment in O(s) space:

Marco-Sola, Santiago ; Eizenga, Jordan M ; Guarracino, Andrea...
qt2b11n9d5.  , 2023
Link: https://escholarship.org..
 
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14

Personalized Pangenome References:

Sirén, Jouni ; Eskandar, Parsa ; Ungaro, Matteo Tommaso...
qt1q0545df.  , 2023
Link: https://escholarship.org..
 
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15

Pangenome graph construction from genome alignments with Mi..:

Hickey, Glenn ; Monlong, Jean ; Ebler, Jana...
qt1t8528hp.  , 2023
Link: https://escholarship.org..
 
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