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Erik Garrison
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1

A revamped rat reference genome improves the discovery of g..:

de Jong, Tristan V. ; Pan, Yanchao ; Rastas, Pasi...
Cell Genomics.  4 (2024)  4 - p. 100527 , 2024
Link: https://doi.org/10.1016/..
 
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2

Pangenome graph layout by Path-Guided Stochastic Gradient D..:

Heumos, Simon ; Guarracino, Andrea ; Schmelzle, Jan-Niklas M...
Bioinformatics.  40 (2024)  7 - p. , 2024
Link: https://doi.org/10.1093/..
 
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3

Protocol for preparing Drosophila genomic DNA to create chr..:

Sperling, Alexis L. ; Fabian, Daniel K. ; Garrison, Erik.
STAR Protocols.  5 (2024)  2 - p. 102974 , 2024
Link: https://doi.org/10.1016/..
 
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4

A genetic basis for facultative parthenogenesis in Drosophi..:

Sperling, Alexis L. ; Fabian, Daniel K. ; Garrison, Erik.
Current Biology.  33 (2023)  17 - p. 3545-3560.e13 , 2023
Link: https://doi.org/10.1016/..
 
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5

A super-pangenome of the North American wild grape species:

Cochetel, Noé ; Minio, Andrea ; Guarracino, Andrea...
Genome Biology.  24 (2023)  1 - p. , 2023
Link: https://doi.org/10.1186/..
 
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6

Pangenome graphs in infectious disease: a comprehensive gen..:

Yang, Zuyu ; Guarracino, Andrea ; Biggs, Patrick J....
Frontiers in Genetics.  14 (2023)  - p. , 2023
Link: https://doi.org/10.3389/..
 
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7

The complete sequence of a human Y chromosome:

Rhie, Arang ; Nurk, Sergey ; Cechova, Monika...
Nature.  621 (2023)  7978 - p. 344-354 , 2023
Link: https://doi.org/10.1038/..
 
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8

Haplotype-aware pantranscriptome analyses using spliced pan..:

Sibbesen, Jonas A. ; Eizenga, Jordan M. ; Novak, Adam M....
Nature Methods.  20 (2023)  2 - p. 239-247 , 2023
Link: https://doi.org/10.1038/..
 
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9

Minmers are a generalization of minimizers that enable unbi..:

Kille, Bryce ; Garrison, Erik ; Treangen, Todd J..
Bioinformatics.  39 (2023)  9 - p. , 2023
Link: https://doi.org/10.1093/..
 
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10

Optimal gap-affine alignment in O(s) space:

Marco-Sola, Santiago ; Eizenga, Jordan M ; Guarracino, Andrea...
Bioinformatics.  39 (2023)  2 - p. , 2023
Link: https://doi.org/10.1093/..
 
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11

ODGI: understanding pangenome graphs:

Guarracino, Andrea ; Heumos, Simon ; Nahnsen, Sven...
Bioinformatics.  38 (2022)  13 - p. 3319-3326 , 2022
Link: https://doi.org/10.1093/..
 
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12

A spectrum of free software tools for processing the VCF va..:

Garrison, Erik ; Kronenberg, Zev N. ; Dawson, Eric T....
PLOS Computational Biology.  18 (2022)  5 - p. e1009123 , 2022
Link: https://doi.org/10.1371/..
 
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13

Unbiased pangenome graphs:

Garrison, Erik ; Guarracino, Andrea ; Alkan, Can
Bioinformatics.  39 (2022)  1 - p. , 2022
Link: https://doi.org/10.1093/..
 
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14

Landscape and selection of vaccine epitopes in SARS-CoV-2:

Smith, Christof C. ; Olsen, Kelly S. ; Gentry, Kaylee M....
Genome Medicine.  13 (2021)  1 - p. , 2021
Link: https://doi.org/10.1186/..
 
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15

A strategy for building and using a human reference pangeno..:

Llamas, Bastien ; Narzisi, Giuseppe ; Schneider, Valerie...
F1000Research.  8 (2021)  - p. 1751 , 2021
Link: https://doi.org/10.12688..
 
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