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Freddolino, Peter L.
221
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Online (221)
Mediatypes
Articles (Online) (75)
OpenAccess-fulltext (146)
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1
Modeling heterochromatin dynamics in S. pombe across divers..:
Farhat, Ali M.
;
Biswas, Saikat
;
Chen, Ziyuan
...
Biophysical Journal. 122 (2023) 3 - p. 497a , 2023
Link:
https://doi.org/10.1016/..
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2
Integrating deep learning, threading alignments, and a mult..:
Zheng, Wei
;
Wuyun, Qiqige
;
Freddolino, Peter L.
.
Proteins: Structure, Function, and Bioinformatics. 91 (2023) 12 - p. 1684-1703 , 2023
Link:
https://doi.org/10.1002/..
?
3
Escherichia coli Leucine-Responsive Regulatory Protein Brid..:
Ziegler, Christine A.
;
Freddolino, Peter L.
;
Stallings, Christina L.
mBio. 14 (2023) 2 - p. , 2023
Link:
https://doi.org/10.1128/..
?
4
High throughput structure-guided functional annotation of m..:
Freddolino, Peter L.
;
Bell, Eric
;
Schwartz, Jacob
..
Biophysical Journal. 122 (2023) 3 - p. 311a-312a , 2023
Link:
https://doi.org/10.1016/..
?
5
VMD as a Platform for Interactive Small Molecule Preparatio..:
Spivak, Mariano
;
Stone, John E.
;
Ribeiro, João
...
Journal of Chemical Information and Modeling. 63 (2023) 15 - p. 4664-4678 , 2023
Link:
https://doi.org/10.1021/..
?
6
BioLiP2: an updated structure database for biologically rel..:
Zhang, Chengxin
;
Zhang, Xi
;
Freddolino, Peter L
.
Nucleic Acids Research. 52 (2023) D1 - p. D404-D412 , 2023
Link:
https://doi.org/10.1093/..
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7
Nutrigenomic regulation of sensory plasticity:
Vaziri, Anoumid
;
Sung, Hayeon
;
Wilinski, Daniel
...
eLife. 12 (2023) - p. , 2023
Link:
https://doi.org/10.7554/..
?
8
Protein target highlights in CASP15: Analysis of models by ..:
Alexander, Leila T.
;
Durairaj, Janani
;
Kryshtafovych, Andriy
...
Proteins: Structure, Function, and Bioinformatics. 91 (2023) 12 - p. 1571-1599 , 2023
Link:
https://doi.org/10.1002/..
?
9
Correction: Dynamic landscape of protein occupancy across t..:
Freddolino, Peter L.
;
Amemiya, Haley M.
;
Goss, Thomas J.
.
PLOS Biology. 20 (2022) 4 - p. e3001557 , 2022
Link:
https://doi.org/10.1371/..
?
10
CR-I-TASSER: assemble protein structures from cryo-EM densi..:
Zhang, Xi
;
Zhang, Biao
;
Freddolino, Peter L.
.
Nature Methods. 19 (2022) 2 - p. 195-204 , 2022
Link:
https://doi.org/10.1038/..
?
11
Epistasis at the SARS-CoV-2 Receptor-Binding Domain Interfa..:
Rochman, Nash D.
;
Faure, Guilhem
;
Wolf, Yuri I.
...
mBio. 13 (2022) 2 - p. , 2022
Link:
https://doi.org/10.1128/..
?
12
Intracellular acidification is a hallmark of thymineless de..:
Ketcham, Alexandra
;
Freddolino, Peter L.
;
Tavazoie, Saeed
.
PLOS Genetics. 18 (2022) 10 - p. e1010456 , 2022
Link:
https://doi.org/10.1371/..
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13
LOMETS3: integrating deep learning and profile alignment fo..:
Zheng, Wei
;
Wuyun, Qiqige
;
Zhou, Xiaogen
...
Nucleic Acids Research. 50 (2022) W1 - p. W454-W464 , 2022
Link:
https://doi.org/10.1093/..
?
14
Genetic context effects can override canonical cis regulato..:
Scholz, Scott A
;
Lindeboom, Chase D
;
Freddolino, Peter L
Nucleic Acids Research. 50 (2022) 18 - p. 10360-10375 , 2022
Link:
https://doi.org/10.1093/..
?
15
PEPPI: Whole-proteome Protein-protein Interaction Predictio..:
Bell, Eric W.
;
Schwartz, Jacob H.
;
Freddolino, Peter L.
.
Journal of Molecular Biology. 434 (2022) 11 - p. 167530 , 2022
Link:
https://doi.org/10.1016/..
1-15