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Hofmeyr, Steven
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1

Exabiome: Advancing Microbial Science through Exascale Comp..:

Hofmeyr, Steven ; Buluç, Aydin ; Riley, Robert...
Computing in Science & Engineering.  , 2024
Link: https://doi.org/10.1109/..
 
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2

Terabase-Scale Coassembly of a Tropical Soil Microbiome:

Riley, Robert ; Bowers, Robert M. ; Camargo, Antonio Pedro...
Microbiology Spectrum.  11 (2023)  4 - p. , 2023
Link: https://doi.org/10.1128/..
 
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3

High-Performance Filters for GPUs:

, In: Proceedings of the 28th ACM SIGPLAN Annual Symposium on Principles and Practice of Parallel Programming,
McCoy, Hunter ; Hofmeyr, Steven ; Yelick, Katherine. - p. 160-173 , 2023
Link: https://dl.acm.org/doi/1..
 
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4

Designing Efficient SIMD Kernels for High Performance Seque..:

, In: 2023 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW),
Popovici, Doru Thom ; Awan, Muaaz Gul ; Guidi, Giulia... - p. 167-176 , 2023
Link: https://doi.org/10.1109/..
 
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5

Understanding the Power of Evolutionary Computation for GPU..:

, In: 2022 IEEE International Symposium on Workload Characterization (IISWC),
Liou, Jhe-Yu ; Awan, Muaaz ; Hofmeyr, Steven.. - p. 185-198 , 2022
Link: https://doi.org/10.1109/..
 
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6

Critical Assessment of Metagenome Interpretation: the secon..:

Meyer, Fernando ; Fritz, Adrian ; Deng, Zhi-Luo...
Nature Methods.  19 (2022)  4 - p. 429-440 , 2022
Link: https://doi.org/10.1038/..
 
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7

Spatially distributed infection increases viral load in a c..:

Moses, Melanie E. ; Hofmeyr, Steven ; Cannon, Judy L....
PLOS Computational Biology.  17 (2021)  12 - p. e1009735 , 2021
Link: https://doi.org/10.1371/..
 
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8

Accelerating large scale de novo metagenome assembly using ..:

, In: Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis,
Awan, Muaaz Gul ; Hofmeyr, Steven ; Egan, Rob... - p. 1-11 , 2021
Link: https://dl.acm.org/doi/1..
 
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9

A Case Study and Characterization of a Many-socket, Multi-t..:

, In: 2020 IEEE/ACM 6th Workshop on the LLVM Compiler Infrastructure in HPC (LLVM-HPC) and Workshop on Hierarchical Parallelism for Exascale Computing (HiPar),
Imes, Connor ; Hofmeyr, Steven ; Kang, Dong In D.. - p. 74-84 , 2020
Link: https://doi.org/10.1109/..
 
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10

Terabase-scale metagenome coassembly with MetaHipMer:

Hofmeyr, Steven ; Egan, Rob ; Georganas, Evangelos...
Scientific Reports.  10 (2020)  1 - p. , 2020
Link: https://doi.org/10.1038/..
 
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11

ADEPT: a domain independent sequence alignment strategy for..:

Awan, Muaaz G. ; Deslippe, Jack ; Buluc, Aydin...
BMC Bioinformatics.  21 (2020)  1 - p. , 2020
Link: https://doi.org/10.1186/..
 
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12

GPU accelerated partial order multiple sequence alignment f..:

, In: 2020 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW),
Peverelli, Francesco ; Tucci, Lorenzo Di ; Santambrogio, Marco D.... - p. 1-9 , 2020
Link: https://doi.org/10.1109/..
 
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13

LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignmen:

, In: 2020 IEEE International Parallel and Distributed Processing Symposium (IPDPS),
Zeni, Alberto ; Guidi, Giulia ; Ellis, Marquita... - p. 462-471 , 2020
Link: https://doi.org/10.1109/..
 
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14

The parallelism motifs of genomic data analysis:

Yelick, Katherine ; Buluç, Aydın ; Awan, Muaaz...
Philosophical Transactions: Mathematical, Physical and Engineering Sciences.  378 (2020)  2166 - p. 1-17 , 2020
Link: https://www.jstor.org/st..
 
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15

UPC++: A High-Performance Communication Framework for Async..:

, In: 2019 IEEE International Parallel and Distributed Processing Symposium (IPDPS),
Bachan, John ; Baden, Scott B. ; Hofmeyr, Steven... - p. 963-973 , 2019
Link: https://doi.org/10.1109/..
 
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