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Ionescu, Crina-Maria
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1

Mol* Volumes and Segmentations: visualization and interpret..:

Chareshneu, Aliaksei ; Midlik, Adam ; Ionescu, Crina-Maria...
Nucleic Acids Research.  51 (2023)  W1 - p. W326-W330 , 2023
Link: https://doi.org/10.1093/..
 
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2

NAChRDB: A Web Resource of Structure–Function Annotations t..:

Chareshneu, Aliaksei ; Pant, Purbaj ; Tristão Ramos, Ravi José...
ACS Omega.  6 (2021)  36 - p. 23023-23027 , 2021
Link: https://doi.org/10.1021/..
 
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3

CrocoBLAST: Running BLAST efficiently in the age of next-ge..:

Tristão Ramos, Ravi José ; de Azevedo Martins, Allan Cézar ; da Silva Delgado, Gabrielle...
Bioinformatics.  33 (2017)  22 - p. 3648-3651 , 2017
Link: https://doi.org/10.1093/..
 
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4

PatternQuery: web application for fast detection of biomacr..:

Sehnal, David ; Pravda, Lukáš ; Svobodová Vařeková, Radka..
Nucleic Acids Research.  43 (2015)  W1 - p. W383-W388 , 2015
Link: https://doi.org/10.1093/..
 
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5

AtomicChargeCalculator: interactive web-based calculation o..:

Ionescu, Crina-Maria ; Sehnal, David ; Falginella, Francesco L....
Journal of Cheminformatics.  7 (2015)  1 - p. , 2015
Link: https://doi.org/10.1186/..
 
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6

How Does the Methodology of 3D Structure Preparation Influe..:

Geidl, Stanislav ; Svobodová Vařeková, Radka ; Bendová, Veronika...
Journal of Chemical Information and Modeling.  55 (2015)  6 - p. 1088-1097 , 2015
Link: https://doi.org/10.1021/..
 
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7

Empirical charges for chemoinformatics applications:

Bouchal, Tomáš ; Vařeková, Radka Svobodová ; Raček, Tomáš...
Journal of Cheminformatics.  6 (2014)  S1 - p. , 2014
Link: https://doi.org/10.1186/..
 
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8

Consistency of sugar structures and their annotation in the..:

Jaiswal, Deepti ; Sehnal, David ; Vařeková, Radka Svobodová..
Journal of Cheminformatics.  6 (2014)  S1 - p. , 2014
Link: https://doi.org/10.1186/..
 
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9

QM quality atomic charges for proteins:

Geidl, Stanislav ; Ionescu, Crina-Maria ; Vařeková, Radka Svobodová.
Journal of Cheminformatics.  6 (2014)  S1 - p. , 2014
Link: https://doi.org/10.1186/..
 
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10

ValidatorDB: database of up-to-date validation results for ..:

Sehnal, David ; Svobodová Vařeková, Radka ; Pravda, Lukáš...
Nucleic Acids Research.  43 (2014)  D1 - p. D369-D375 , 2014
Link: https://doi.org/10.1093/..
 
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11

Predicting pKa values from EEM atomic charges:

Vařeková, Radka Svobodová ; Geidl, Stanislav ; Ionescu, Crina-Maria...
Journal of Cheminformatics.  5 (2013)  1 - p. , 2013
Link: https://doi.org/10.1186/..
 
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12

Rapid Calculation of Accurate Atomic Charges for Proteins v..:

Ionescu, Crina-Maria ; Geidl, Stanislav ; Svobodová Vařeková, Radka.
Journal of Chemical Information and Modeling.  53 (2013)  10 - p. 2548-2558 , 2013
Link: https://doi.org/10.1021/..
 
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13

MOLE 2.0: advanced approach for analysis of biomacromolecul..:

Sehnal, David ; Svobodová Vařeková, Radka ; Berka, Karel...
Journal of Cheminformatics.  5 (2013)  1 - p. , 2013
Link: https://doi.org/10.1186/..
 
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14

Searching for tunnels of proteins – comparison of approache..:

Jaiswal, Deepti ; Vařeková, Radka Svobodová ; Ionescu, Crina-Maria..
Journal of Cheminformatics.  4 (2012)  S1 - p. , 2012
Link: https://doi.org/10.1186/..
 
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15

Charge Profile Analysis Reveals That Activation of Pro-apop..:

Ionescu, Crina-Maria ; Svobodová Vařeková, Radka ; Prehn, Jochen H. M....
PLoS Computational Biology.  8 (2012)  6 - p. e1002565 , 2012
Link: https://doi.org/10.1371/..
 
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