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Křenek, Aleš
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1

Acceleration of Molecular Simulations by Parametric Time-La..:

Hradiská, Helena ; Kurečka, Martin ; Beránek, Jan...
The Journal of Physical Chemistry B.  128 (2024)  4 - p. 903-913 , 2024
Link: https://doi.org/10.1021/..
 
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2

αCharges: partial atomic charges for AlphaFold structures i..:

Schindler, Ondřej ; Berka, Karel ; Cantara, Alessio...
Nucleic Acids Research.  51 (2023)  W1 - p. W11-W16 , 2023
Link: https://doi.org/10.1093/..
 
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3

A survey of the European Open Science Cloud services for ex..:

Calatrava, Amanda ; Asorey, Hernán ; Astalos, Jan...
Computer Science Review.  49 (2023)  - p. 100571 , 2023
Link: https://doi.org/10.1016/..
 
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4

Property Map Collective Variable as a Useful Tool for a For..:

Trapl, Dalibor ; Krupička, Martin ; Višňovský, Vladimír...
Journal of Chemical Information and Modeling.  62 (2022)  3 - p. 567-576 , 2022
Link: https://doi.org/10.1021/..
 
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5

The EurOPDX Data Portal: an open platform for patient-deriv..:

Dudová, Zdenka ; Conte, Nathalie ; Mason, Jeremy...
BMC Genomics.  23 (2022)  1 - p. , 2022
Link: https://doi.org/10.1186/..
 
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6

Collective Variable for Metadynamics Derived From AlphaFold..:

Spiwok, Vojtěch ; Kurečka, Martin ; Křenek, Aleš
Frontiers in Molecular Biosciences.  9 (2022)  - p. , 2022
Link: https://doi.org/10.3389/..
 
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7

Similarity Search for an Extreme Application: Experience an..:

, In: Similarity Search and Applications; Lecture Notes in Computer Science,
Mic, Vladimir ; Raček, Tomáš ; Křenek, Aleš. - p. 265-279 , 2021
Link: https://doi.org/10.1007/..
 
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8

West-Life: A Virtual Research Environment for structural bi..:

Morris, Chris ; Andreetto, Paolo ; Banci, Lucia...
Journal of Structural Biology: X.  1 (2019)  - p. 100006 , 2019
Link: https://doi.org/10.1016/..
 
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9

Identification of "BRAF-Positive" Cases Based on Whole-Slid..:

Popovici, Vlad ; Křenek, Aleš ; Budinská, Eva
BioMed Research International.  2017 (2017)  - p. 1-7 , 2017
Link: https://doi.org/10.1155/..
 
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10

Reducing the number of mean-square deviation calculations w..:

Pazúriková, Jana ; Křenek, Aleš ; Spiwok, Vojtěch.
The Journal of Chemical Physics.  146 (2017)  11 - p. , 2017
Link: https://doi.org/10.1063/..
 
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11

NEEMP: software for validation, accurate calculation and fa..:

Raček, Tomáš ; Pazúriková, Jana ; Svobodová Vařeková, Radka...
Journal of Cheminformatics.  8 (2016)  1 - p. , 2016
Link: https://doi.org/10.1186/..
 
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12

Nonlinear vs. linear biasing in Trp-cage folding simulation:

Spiwok, Vojtěch ; Oborský, Pavel ; Pazúriková, Jana..
The Journal of Chemical Physics.  142 (2015)  11 - p. 115101 , 2015
Link: https://doi.org/10.1063/..
 
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13

High-quality and universal empirical atomic charges for che..:

Geidl, Stanislav ; Bouchal, Tomáš ; Raček, Tomáš...
Journal of Cheminformatics.  7 (2015)  1 - p. , 2015
Link: https://doi.org/10.1186/..
 
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14

Genome assembly and annotation for red clover (Trifolium pr..:

Ištvánek, Jan ; Jaroš, Michal ; Křenek, Aleš.
American Journal of Botany.  101 (2014)  2 - p. 327-337 , 2014
Link: https://doi.org/10.3732/..
 
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15

Empirical charges for chemoinformatics applications:

Bouchal, Tomáš ; Vařeková, Radka Svobodová ; Raček, Tomáš...
Journal of Cheminformatics.  6 (2014)  S1 - p. , 2014
Link: https://doi.org/10.1186/..
 
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