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Kappel, Kalli
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1

DAPTEV: Deep aptamer evolutionary modelling for COVID-19 dr..:

Andress, Cameron ; Kappel, Kalli ; Villena, Marcus Elbert...
PLOS Computational Biology.  19 (2023)  7 - p. e1010774 , 2023
Link: https://doi.org/10.1371/..
 
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2

Structure of the OMEGA nickase IsrB in complex with ωRNA an..:

Hirano, Seiichi ; Kappel, Kalli ; Altae-Tran, Han...
Nature.  610 (2022)  7932 - p. 575-581 , 2022
Link: https://doi.org/10.1038/..
 
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3

Correction to "The Rosetta All-Atom Energy Function for Mac..:

Alford, Rebecca F. ; Leaver-Fay, Andrew ; Jeliazkov, Jeliazko R....
Journal of Chemical Theory and Computation.  18 (2022)  7 - p. 4594-4594 , 2022
Link: https://doi.org/10.1021/..
 
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4

Topological crossing in the misfoldedTetrahymenaribozyme re..:

Li, Shanshan ; Palo, Michael Z. ; Pintilie, Grigore...
Proceedings of the National Academy of Sciences.  119 (2022)  37 - p. , 2022
Link: https://doi.org/10.1073/..
 
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5

Cryo-EM structures of full-length Tetrahymena ribozyme at 3..:

Su, Zhaoming ; Zhang, Kaiming ; Kappel, Kalli...
Nature.  596 (2021)  7873 - p. 603-607 , 2021
Link: https://doi.org/10.1038/..
 
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6

Learning cis-regulatory principles of ADAR-based RNA editin..:

Liu, Xin ; Sun, Tao ; Shcherbina, Anna...
Nature Communications.  12 (2021)  1 - p. , 2021
Link: https://doi.org/10.1038/..
 
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7

Distinct Conformational States Underlie Pausing during Init..:

Larsen, Kevin P. ; Choi, Junhong ; Jackson, Lynnette N....
Journal of Molecular Biology.  432 (2020)  16 - p. 4499-4522 , 2020
Link: https://doi.org/10.1016/..
 
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8

Cryo-EM structure of a 40 kDa SAM-IV riboswitch RNA at 3.7 ..:

Zhang, Kaiming ; Li, Shanshan ; Kappel, Kalli...
Nature Communications.  10 (2019)  1 - p. , 2019
Link: https://doi.org/10.1038/..
 
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9

Sampling Native-like Structures of RNA-Protein Complexes th..:

Kappel, Kalli ; Das, Rhiju
Structure.  27 (2019)  1 - p. 140-151.e5 , 2019
Link: https://doi.org/10.1016/..
 
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10

Blind tests of RNA–protein binding affinity prediction:

Kappel, Kalli ; Jarmoskaite, Inga ; Vaidyanathan, Pavanapuresan P....
Proceedings of the National Academy of Sciences of the United States of America.  116 (2019)  17 - p. 8336-8341 , 2019
Link: https://www.jstor.org/st..
 
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11

Blind tests of RNA–protein binding affinity prediction:

Kappel, Kalli ; Jarmoskaite, Inga ; Vaidyanathan, Pavanapuresan P....
Proceedings of the National Academy of Sciences.  116 (2019)  17 - p. 8336-8341 , 2019
Link: https://doi.org/10.1073/..
 
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12

A unified mechanism for intron and exon definition and back..:

Li, Xueni ; Liu, Shiheng ; Zhang, Lingdi...
Nature.  573 (2019)  7774 - p. 375-380 , 2019
Link: https://doi.org/10.1038/..
 
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13

RNA 3D structure prediction guided by independent folding o..:

Magnus, Marcin ; Kappel, Kalli ; Das, Rhiju.
BMC Bioinformatics.  20 (2019)  1 - p. , 2019
Link: https://doi.org/10.1186/..
 
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14

Architecture of an HIV-1 reverse transcriptase initiation c..:

Larsen, Kevin P. ; Mathiharan, Yamuna Kalyani ; Kappel, Kalli...
Nature.  557 (2018)  7703 - p. 118-122 , 2018
Link: https://doi.org/10.1038/..
 
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15

The Rosetta All-Atom Energy Function for Macromolecular Mod..:

Alford, Rebecca F. ; Leaver-Fay, Andrew ; Jeliazkov, Jeliazko R....
Journal of Chemical Theory and Computation.  13 (2017)  6 - p. 3031-3048 , 2017
Link: https://doi.org/10.1021/..
 
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