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Karchin, Rachel
241  results:
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1

Assessing the merits: an opinion on the effectiveness of si..:

Lai, Jiaying ; Yang, Yi ; Liu, Yunzhou...
Bioinformatics Advances.  4 (2024)  1 - p. , 2024
Link: https://doi.org/10.1093/..
 
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2

Improving transparency of computational tools for variant e..:

Karchin, Rachel ; Radivojac, Predrag ; O'Donnell-Luria, Anne...
Nature Genetics.  56 (2024)  7 - p. 1324-1326 , 2024
Link: https://doi.org/10.1038/..
 
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3

Deep neural networks predict class I major histocompatibili..:

Albert, Benjamin Alexander ; Yang, Yunxiao ; Shao, Xiaoshan M....
Nature Machine Intelligence.  5 (2023)  8 - p. 861-872 , 2023
Link: https://doi.org/10.1038/..
 
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4

Using the ACMG/AMP framework to capture evidence related to..:

Walker, Logan C. ; Hoya, Miguel de la ; Wiggins, George A.R....
The American Journal of Human Genetics.  110 (2023)  7 - p. 1046-1067 , 2023
Link: https://doi.org/10.1016/..
 
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5

Persistent mutation burden drives sustained anti-tumor immu..:

Niknafs, Noushin ; Balan, Archana ; Cherry, Christopher...
Nature Medicine.  29 (2023)  2 - p. 440-449 , 2023
Link: https://doi.org/10.1038/..
 
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6

Clustering by antigen-presenting genes reveals immune lands..:

Gong, Xutong ; Karchin, Rachel
Scientific Reports.  13 (2023)  1 - p. , 2023
Link: https://doi.org/10.1038/..
 
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7

Chimeric RNAs reveal putative neoantigen peptides for devel..:

Mistretta, Brandon ; Rankothgedera, Sakuni ; Castillo, Micah...
Frontiers in Immunology.  14 (2023)  - p. , 2023
Link: https://doi.org/10.3389/..
 
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8

Calibration of computational tools for missense variant pat..:

Pejaver, Vikas ; Byrne, Alicia B. ; Feng, Bing-Jian...
The American Journal of Human Genetics.  109 (2022)  12 - p. 2163-2177 , 2022
Link: https://doi.org/10.1016/..
 
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9

Experimental and In Silico Analysis of TEM β-Lactamase Adap..:

Standley, Melissa ; Blay, Vincent ; Beleva Guthrie, Violeta...
ACS Infectious Diseases.  8 (2022)  12 - p. 2451-2463 , 2022
Link: https://doi.org/10.1021/..
 
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10

Clinical Trial Development in TP53-Mutated Locally Advanced..:

Rodriguez, Cristina P ; Kang, Hyunseok ; Geiger, Jessica L...
JNCI: Journal of the National Cancer Institute.  114 (2022)  12 - p. 1619-1627 , 2022
Link: https://doi.org/10.1093/..
 
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11

Sex-specific differences in immunogenomic features of respo..:

Scott, Susan C. ; Shao, Xiaoshan M. ; Niknafs, Noushin...
Frontiers in Oncology.  12 (2022)  - p. , 2022
Link: https://doi.org/10.3389/..
 
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12

10. HLA class II Immunogenic Mutation Burden predicts respo..:

Shao, Xiaoshan ; Huang, Justin ; Niknafs, Noushin...
Cancer Genetics.  268-269 (2022)  - p. 4 , 2022
Link: https://doi.org/10.1016/..
 
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13

Durvalumab with platinum-pemetrexed for unresectable pleura..:

Forde, Patrick M. ; Anagnostou, Valsamo ; Sun, Zhuoxin...
Nature Medicine.  27 (2021)  11 - p. 1910-1920 , 2021
Link: https://doi.org/10.1038/..
 
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14

Assessing aneuploidy with repetitive element sequencing:

Douville, Christopher ; Cohen, Joshua D. ; Ptak, Janine...
Proceedings of the National Academy of Sciences.  117 (2020)  9 - p. 4858-4863 , 2020
Link: https://doi.org/10.1073/..
 
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15

39. Integrated informatics analysis of cancer-related varia..:

Pagel, Kymberleigh ; Kim, Rick ; Moad, Kyle...
Cancer Genetics.  244 (2020)  - p. 15 , 2020
Link: https://doi.org/10.1016/..
 
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