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Kerpedjiev, Peter
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1

DrForna: visualization of cotranscriptional folding:

Tănasie, Anda Ramona ; Kerpedjiev, Peter ; Hammer, Stefan..
Bioinformatics.  39 (2023)  9 - p. , 2023
Link: https://doi.org/10.1093/..
 
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2

The dynseq browser track shows context-specific features at..:

Nair, Surag ; Barrett, Arjun ; Li, Daofeng...
Nature Genetics.  54 (2022)  11 - p. 1581-1583 , 2022
Link: https://doi.org/10.1038/..
 
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3

Author Correction: The 4D Nucleome Data Portal as a resourc..:

Reiff, Sarah B. ; Schroeder, Andrew J. ; Kırlı, Koray...
Nature Communications.  13 (2022)  1 - p. , 2022
Link: https://doi.org/10.1038/..
 
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4

The 4D Nucleome Data Portal as a resource for searching and..:

Reiff, Sarah B. ; Schroeder, Andrew J. ; Kırlı, Koray...
Nature Communications.  13 (2022)  1 - p. , 2022
Link: https://doi.org/10.1038/..
 
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5

HiNT: a computational method for detecting copy number vari..:

Wang, Su ; Lee, Soohyun ; Chu, Chong...
Genome Biology.  21 (2020)  1 - p. , 2020
Link: https://doi.org/10.1186/..
 
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6

Pattern-Driven Navigation in 2D Multiscale Visualizations w..:

Lekschas, Fritz ; Behrisch, Michael ; Bach, Benjamin...
IEEE Transactions on Visualization and Computer Graphics.  , 2019
Link: https://doi.org/10.1109/..
 
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7

3D based on 2D: Calculating helix angles and stacking patte..:

Thiel, Bernhard C. ; Beckmann, Irene K. ; Kerpedjiev, Peter.
F1000Research.  8 (2019)  - p. 287 , 2019
Link: https://doi.org/10.12688..
 
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8

3D based on 2D: Calculating helix angles and stacking patte..:

Thiel, Bernhard C. ; Beckmann, Irene K. ; Kerpedjiev, Peter.
F1000Research.  8 (2019)  - p. 287 , 2019
Link: https://doi.org/10.12688..
 
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9

HiPiler: Visual Exploration of Large Genome Interaction Mat..:

Lekschas, Fritz ; Bach, Benjamin ; Kerpedjiev, Peter..
IEEE Transactions on Visualization and Computer Graphics.  24 (2018)  1 - p. 522-531 , 2018
Link: https://doi.org/10.1109/..
 
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10

HiGlass: web-based visual exploration and analysis of genom..:

Kerpedjiev, Peter ; Abdennur, Nezar ; Lekschas, Fritz...
Genome Biology.  19 (2018)  1 - p. , 2018
Link: https://doi.org/10.1186/..
 
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11

RIsearch2: suffix array-based large-scale prediction of RNA..:

Alkan, Ferhat ; Wenzel, Anne ; Palasca, Oana...
Nucleic Acids Research.  , 2017
Link: https://doi.org/10.1093/..
 
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12

Forna (force-directed RNA): Simple and effective online RNA..:

Kerpedjiev, Peter ; Hammer, Stefan ; Hofacker, Ivo L.
Bioinformatics.  31 (2015)  20 - p. 3377-3379 , 2015
Link: https://doi.org/10.1093/..
 
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13

Adaptable probabilistic mapping of short reads using positi..:

Kerpedjiev, Peter ; Frellsen, Jes ; Lindgreen, Stinus.
BMC Bioinformatics.  15 (2014)  1 - p. , 2014
Link: https://doi.org/10.1186/..
 
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14

Complete Genome Sequence of the Cystic Fibrosis Pathogen Ac..:

Jakobsen, Tim Holm ; Hansen, Martin Asser ; Jensen, Peter Østrup...
PLoS ONE.  8 (2013)  7 - p. e68484 , 2013
Link: https://doi.org/10.1371/..
 
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15

cooler:

Abdennur, Nezar ; Goloborodko, Anton ; Imakaev, Maxim...
https://github.com/open2c/cooler/tree/v0.9.1.  , 2023
Link: https://zenodo.org/recor..
 
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