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Kidera, Akinori
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1

Functional dynamics of SARS-CoV-2 3C-like protease as a mem..:

Kidera, Akinori ; Moritsugu, Kei ; Ekimoto, Toru.
Biophysical Reviews.  14 (2022)  6 - p. 1473-1485 , 2022
Link: https://doi.org/10.1007/..
 
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2

Binding and Unbinding Pathways of Peptide Substrates on the..:

Moritsugu, Kei ; Ekimoto, Toru ; Ikeguchi, Mitsunori.
Journal of Chemical Information and Modeling.  63 (2022)  1 - p. 240-250 , 2022
Link: https://doi.org/10.1021/..
 
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3

Allosteric Regulation of 3CL Protease of SARS-CoV-2 and SAR..:

Kidera, Akinori ; Moritsugu, Kei ; Ekimoto, Toru.
Journal of Molecular Biology.  433 (2021)  24 - p. 167324 , 2021
Link: https://doi.org/10.1016/..
 
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4

Molecular basis of ubiquitin-specific protease 8 autoinhibi..:

Kakihara, Keijun ; Asamizu, Kengo ; Moritsugu, Kei...
Communications Biology.  4 (2021)  1 - p. , 2021
Link: https://doi.org/10.1038/..
 
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5

Inter-lobe Motions Allosterically Regulate the Structure an..:

Moritsugu, Kei ; Nishino, Yoshihiko ; Kidera, Akinori
Journal of Molecular Biology.  432 (2020)  16 - p. 4561-4575 , 2020
Link: https://doi.org/10.1016/..
 
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6

Allosteric response to ligand binding: Molecular dynamics s..:

Moritsugu, Kei ; Ito, Tsubasa ; Kidera, Akinori
Biophysics and Physicobiology.  16 (2019)  0 - p. 232-239 , 2019
Link: https://doi.org/10.2142/..
 
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7

Multiscale enhanced sampling of glucokinase: Regulation of ..:

Moritsugu, Kei ; Terada, Tohru ; Kokubo, Hironori...
The Journal of Chemical Physics.  149 (2018)  7 - p. , 2018
Link: https://doi.org/10.1063/..
 
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8

Dynamic recognition and linkage specificity in K63 di-ubiqu..:

Moritsugu, Kei ; Nishi, Hafumi ; Inariyama, Keiichi..
Scientific Reports.  8 (2018)  1 - p. , 2018
Link: https://doi.org/10.1038/..
 
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9

Energetics and conformational pathways of functional rotati..:

Matsunaga, Yasuhiro ; Yamane, Tsutomu ; Terada, Tohru...
eLife.  7 (2018)  - p. , 2018
Link: https://doi.org/10.7554/..
 
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10

Ionic scattering factors of atoms that compose biological m..:

Yonekura, Koji ; Matsuoka, Rei ; Yamashita, Yoshiki...
IUCrJ.  5 (2018)  3 - p. 348-353 , 2018
Link: https://doi.org/10.1107/..
 
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11

Crystal structure of the Ube2K/E2-25K and K48-linked di-ubi..:

Lee, Jung-Gyu ; Youn, Hyung-Seop ; Kang, Jung Youn...
Biochemical and Biophysical Research Communications.  506 (2018)  1 - p. 102-107 , 2018
Link: https://doi.org/10.1016/..
 
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12

Free-Energy Landscape of Protein–Ligand Interactions Couple..:

Moritsugu, Kei ; Terada, Tohru ; Kidera, Akinori
The Journal of Physical Chemistry B.  121 (2017)  4 - p. 731-740 , 2017
Link: https://doi.org/10.1021/..
 
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13

Nature of self-diffusion in two-dimensional fluids:

Choi, Bongsik ; Han, Kyeong Hwan ; Kim, Changho...
New Journal of Physics.  19 (2017)  12 - p. 123038 , 2017
Link: https://doi.org/10.1088/..
 
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14

Structure of the Dnmt1 Reader Module Complexed with a Uniqu..:

Ishiyama, Satoshi ; Nishiyama, Atsuya ; Saeki, Yasushi...
Molecular Cell.  68 (2017)  2 - p. 350-360.e7 , 2017
Link: https://doi.org/10.1016/..
 
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15

Multiscale enhanced sampling for protein systems: An extens..:

Moritsugu, Kei ; Terada, Tohru ; Kidera, Akinori
Chemical Physics Letters.  661 (2016)  - p. 279-283 , 2016
Link: https://doi.org/10.1016/..
 
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