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Kosakovsky Pond, Sergei L.
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1

AUTO-TUNE: selecting the distance threshold for inferring H..:

Weaver, Steven ; Dávila Conn, Vanessa M. ; Ji, Daniel...
Frontiers in Bioinformatics.  4 (2024)  - p. , 2024
Link: https://doi.org/10.3389/..
 
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2

Somatic genome architecture and molecular evolution are dec..:

Maurer-Alcalá, Xyrus X. ; Cote-L'Heureux, Auden ; Kosakovsky Pond, Sergei L...
PLOS ONE.  19 (2024)  1 - p. e0291688 , 2024
Link: https://doi.org/10.1371/..
 
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3

The evolution of mammalian Rem2: unraveling the impact of p..:

Lucaci, Alexander G. ; Brew, William E. ; Lamanna, Jason...
Frontiers in Bioinformatics.  4 (2024)  - p. , 2024
Link: https://doi.org/10.3389/..
 
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4

The genomic evolutionary dynamics and global circulation pa..:

Langedijk, Annefleur C. ; Vrancken, Bram ; Lebbink, Robert Jan...
Nature Communications.  15 (2024)  1 - p. , 2024
Link: https://doi.org/10.1038/..
 
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5

Anti-COVID drug accelerates viral evolution:

Kosakovsky Pond, Sergei L. ; Martin, Darren
Nature.  623 (2023)  7987 - p. 486-487 , 2023
Link: https://doi.org/10.1038/..
 
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6

Identification of Evolutionary Trajectories Shared across H..:

Escalera-Zamudio, Marina ; Kosakovsky Pond, Sergei L ; Martínez de la Viña, Natalia...
Genome Biology and Evolution.  15 (2023)  6 - p. , 2023
Link: https://doi.org/10.1093/..
 
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7

Recommendations on data sharing in HIV drug resistance rese..:

Inzaule, Seth C. ; Siedner, Mark J. ; Little, Susan J....
PLOS Medicine.  20 (2023)  9 - p. e1004293 , 2023
Link: https://doi.org/10.1371/..
 
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8

Evolutionary Shortcuts via Multinucleotide Substitutions an..:

Lucaci, Alexander G ; Zehr, Jordan D ; Enard, David...
Molecular Biology and Evolution.  40 (2023)  7 - p. , 2023
Link: https://doi.org/10.1093/..
 
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9

Antigen pressure from two founder viruses induces multiple ..:

Joyce, Collin ; Murrell, Sasha ; Murrell, Ben...
PLOS Pathogens.  19 (2023)  6 - p. e1011416 , 2023
Link: https://doi.org/10.1371/..
 
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10

Deep mutational scans of XBB.1.5 and BQ.1.1 reveal ongoing ..:

Taylor, Ashley L. ; Starr, Tyler N. ; Kosakovsky Pond, Sergei L.
PLOS Pathogens.  19 (2023)  12 - p. e1011901 , 2023
Link: https://doi.org/10.1371/..
 
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11

Molecular modeling and phylogenetic analyses highlight the ..:

Elli, Stefano ; Raffaini, Giuseppina ; Guerrini, Marco..
Frontiers in Microbiology.  14 (2023)  - p. , 2023
Link: https://doi.org/10.3389/..
 
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12

Natural selection differences detected in key protein domai..:

Zehr, Jordan D ; Kosakovsky Pond, Sergei L ; Millet, Jean K...
Virus Evolution.  9 (2023)  1 - p. , 2023
Link: https://doi.org/10.1093/..
 
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13

Rapid epidemic expansion of the SARS-CoV-2 Omicron variant ..:

Viana, Raquel ; Moyo, Sikhulile ; Amoako, Daniel G....
Nature.  , 2022
Link: https://doi.org/10.1038/..
 
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14

Conserved recombination patterns across coronavirus subgene..:

de Klerk, Arné ; Swanepoel, Phillip ; Lourens, Rentia...
Virus Evolution.  8 (2022)  2 - p. , 2022
Link: https://doi.org/10.1093/..
 
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15

BOSO: A novel feature selection algorithm for linear regres..:

Valcárcel, Luis V. ; San José-Enériz, Edurne ; Cendoya, Xabier...
PLOS Computational Biology.  18 (2022)  5 - p. e1010180 , 2022
Link: https://doi.org/10.1371/..
 
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