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List, Markus
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1

On the limits of 16S rRNA gene-based metagenome prediction ..:

Matchado, Monica Steffi ; Rühlemann, Malte ; Reitmeier, Sandra...
Microbial Genomics.  10 (2024)  2 - p. , 2024
Link: https://doi.org/10.1099/..
 
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2

Drugst.One — a plug-and-play solution for online systems me..:

Maier, Andreas ; Hartung, Michael ; Abovsky, Mark...
Nucleic Acids Research.  52 (2024)  W1 - p. W481-W488 , 2024
Link: https://doi.org/10.1093/..
 
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3

Blood transcriptomics analysis offers insights into variant..:

Hoffmann, Markus ; Willruth, Lina-Liv ; Dietrich, Alexander...
Scientific Reports.  14 (2024)  1 - p. , 2024
Link: https://doi.org/10.1038/..
 
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4

Making mouse transcriptomics deconvolution accessible with ..:

Merotto, Lorenzo ; Sturm, Gregor ; Dietrich, Alexander...
Bioinformatics Advances.  4 (2024)  1 - p. , 2024
Link: https://doi.org/10.1093/..
 
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5

Guiding questions to avoid data leakage in biological machi..:

Bernett, Judith ; Blumenthal, David B. ; Grimm, Dominik G....
Nature Methods.  21 (2024)  8 - p. 1444-1453 , 2024
Link: https://doi.org/10.1038/..
 
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6

Platelet mass cytometry reveals dysregulation of prothrombo..:

Dill, Veronika ; Kirmes, Kilian ; Han, Jiaying...
Platelets.  35 (2024)  1 - p. , 2024
Link: https://doi.org/10.1080/..
 
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7

Diurnal rhythmicity of infant fecal microbiota and metaboli..:

Heppner, Nina ; Reitmeier, Sandra ; Heddes, Marjolein...
Cell Host & Microbe.  32 (2024)  4 - p. 573-587.e5 , 2024
Link: https://doi.org/10.1016/..
 
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8

Machine Learning and Artificial Intelligence in Drug Repurp..:

Anokian, Ezequiel ; Bernett, Judith ; Freeman, Adrian...
Drug Repurposing.  1 (2024)  1 - p. , 2024
Link: https://doi.org/10.58647..
 
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9

Mitochondrial perturbation in the intestine causes microbio..:

Urbauer, Elisabeth ; Aguanno, Doriane ; Mindermann, Nora...
Cell Host & Microbe.  32 (2024)  8 - p. 1347-1364.e10 , 2024
Link: https://doi.org/10.1016/..
 
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10

Cracking the black box of deep sequence-based protein–prote..:

Bernett, Judith ; Blumenthal, David B ; List, Markus
Briefings in Bioinformatics.  25 (2024)  2 - p. , 2024
Link: https://doi.org/10.1093/..
 
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11

Single-cell transcriptome analysis reveals secretin as a ha..:

Hysenaj, Franc ; Lauber, Michael ; Bast-Habersbrunner, Andrea..
Scientific Reports.  14 (2024)  1 - p. , 2024
Link: https://doi.org/10.1038/..
 
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12

Inference of differential gene regulatory networks using bo..:

Galindez, Gihanna ; List, Markus ; Baumbach, Jan...
Bioinformatics Advances.  4 (2024)  1 - p. , 2024
Link: https://doi.org/10.1093/..
 
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13

Multi-omics regulatory network inference in the presence of..:

Henao, Juan D ; Lauber, Michael ; Azevedo, Manuel...
Briefings in Bioinformatics.  24 (2023)  5 - p. , 2023
Link: https://doi.org/10.1093/..
 
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14

circRNA-sponging: a pipeline for extensive analysis of circ..:

Hoffmann, Markus ; Schwartz, Leon ; Ciora, Octavia-Andreea...
Bioinformatics Advances.  3 (2023)  1 - p. , 2023
Link: https://doi.org/10.1093/..
 
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15

Alternative splicing analysis benchmark with DICAST:

Fenn, Amit ; Tsoy, Olga ; Faro, Tim...
NAR Genomics and Bioinformatics.  5 (2023)  2 - p. , 2023
Link: https://doi.org/10.1093/..
 
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