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Lomsadze, Alexandre
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1

GeneMark-ETP significantly improves the accuracy of automat..:

Brůna, Tomáš ; Lomsadze, Alexandre ; Borodovsky, Mark
Genome Research.  , 2024
Link: https://doi.org/10.1101/..
 
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2

BRAKER3: Fully automated genome annotation using RNA-seq an..:

Gabriel, Lars ; Brůna, Tomáš ; Hoff, Katharina J....
Genome Research.  , 2024
Link: https://doi.org/10.1101/..
 
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3

MgCod: Gene Prediction in Phage Genomes with Multiple Genet..:

Pfennig, Aaron ; Lomsadze, Alexandre ; Borodovsky, Mark
Journal of Molecular Biology.  435 (2023)  14 - p. 168159 , 2023
Link: https://doi.org/10.1016/..
 
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4

A chromosome-length genome assembly and annotation of black..:

Brůna, Tomáš ; Aryal, Rishi ; Dudchenko, Olga...
G3.  13 (2022)  2 - p. , 2022
Link: https://doi.org/10.1093/..
 
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5

BRAKER2: automatic eukaryotic genome annotation with GeneMa..:

Brůna, Tomáš ; Hoff, Katharina J ; Lomsadze, Alexandre..
NAR Genomics and Bioinformatics.  3 (2021)  1 - p. , 2021
Link: https://doi.org/10.1093/..
 
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6

StartLink and StartLink+: Prediction of Gene Starts in Prok..:

Gemayel, Karl ; Lomsadze, Alexandre ; Borodovsky, Mark
Frontiers in Bioinformatics.  1 (2021)  - p. , 2021
Link: https://doi.org/10.3389/..
 
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7

GeneMark-HM: improving gene prediction in DNA sequences of ..:

Lomsadze, Alexandre ; Bonny, Christophe ; Strozzi, Francesco.
NAR Genomics and Bioinformatics.  3 (2021)  2 - p. , 2021
Link: https://doi.org/10.1093/..
 
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8

GeneMark-EP+: eukaryotic gene prediction with self-training..:

Brůna, Tomáš ; Lomsadze, Alexandre ; Borodovsky, Mark
NAR Genomics and Bioinformatics.  2 (2020)  2 - p. , 2020
Link: https://doi.org/10.1093/..
 
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9

Development of a workflow for identification of nuclear gen..:

Houghton, Katelyn A. ; Lomsadze, Alexandre ; Park, Subin...
Parasite.  27 (2020)  - p. 24 , 2020
Link: https://doi.org/10.1051/..
 
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10

Bioinformatics Pipeline for Human Papillomavirus Short Read..:

Lomsadze, Alexandre ; Li, Tengguo ; Rajeevan, Mangalathu S...
Viruses.  12 (2020)  7 - p. 710 , 2020
Link: https://doi.org/10.3390/..
 
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11

Modeling leaderless transcription and atypical genes result..:

Lomsadze, Alexandre ; Gemayel, Karl ; Tang, Shiyuyun.
Genome Research.  28 (2018)  7 - p. 1079-1089 , 2018
Link: https://doi.org/10.1101/..
 
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12

The genome sequence and transcriptome of Potentilla micrant..:

Buti, Matteo ; Moretto, Marco ; Barghini, Elena...
GigaScience.  7 (2017)  4 - p. , 2017
Link: https://doi.org/10.1093/..
 
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13

NCBI prokaryotic genome annotation pipeline:

Tatusova, Tatiana ; DiCuccio, Michael ; Badretdin, Azat...
Nucleic Acids Research.  44 (2016)  14 - p. 6614-6624 , 2016
Link: https://doi.org/10.1093/..
 
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14

Identification of protein coding regions in RNA transcripts:

Tang, Shiyuyun ; Lomsadze, Alexandre ; Borodovsky, Mark
Nucleic Acids Research.  43 (2015)  12 - p. e78-e78 , 2015
Link: https://doi.org/10.1093/..
 
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15

BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with ..:

Hoff, Katharina J. ; Lange, Simone ; Lomsadze, Alexandre..
Bioinformatics.  32 (2015)  5 - p. 767-769 , 2015
Link: https://doi.org/10.1093/..
 
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