E-LIB Suche - Ergebnisse für: Mäkinen, Veli

1

Elastic founder graphs improved and enhanced:

Rizzo, Nicola ; Equi, Massimo ; Norri, Tuukka.
Theoretical Computer Science. 982 (2024) - p. 114269 , 2024

Link: https://doi.org/10.1016/..

2

Finding maximal exact matches in graphs:

Rizzo, Nicola ; Cáceres, Manuel ; Mäkinen, Veli
Algorithms for Molecular Biology. 19 (2024) 1 - p. , 2024

Link: https://doi.org/10.1186/..

3

Tackling reference bias in genotyping by using founder sequ..:

Norri, Tuukka ; Mäkinen, Veli ; Mulder, Nicola
Bioinformatics Advances. 4 (2024) 1 - p. , 2024

Link: https://doi.org/10.1093/..

4

Genome-scale algorithm design

bioinformatics in the era of high-throughput sequencing

Mäkinen, Veli ; Belazzougui, Djamal ; Tomescu, Alexandru I.. - Second edition. . , 2023

Link: https://doi.org/10.1017/..

5

On the Complexity of String Matching for Graphs:

Equi, Massimo ; Mäkinen, Veli ; Tomescu, Alexandru I..
ACM Transactions on Algorithms. 19 (2023) 3 - p. 1-25 , 2023

Link: https://doi.org/10.1145/..

6

Chaining of Maximal Exact Matches in Graphs:

, In: String Processing and Information Retrieval; Lecture Notes in Computer Science,

Rizzo, Nicola ; Cáceres, Manuel ; Mäkinen, Veli - p. 353-366 , 2023

Link: https://doi.org/10.1007/..

7

Chaining for accurate alignment of erroneous long reads to ..:

Ma, Jun ; Cáceres, Manuel ; Salmela, Leena...
Bioinformatics. 39 (2023) 8 - p. , 2023

Link: https://doi.org/10.1093/..

8

Graphs cannot be indexed in polynomial time for sub-quadrat..:

Equi, Massimo ; Mäkinen, Veli ; Tomescu, Alexandru I.
Theoretical Computer Science. 975 (2023) - p. 114128 , 2023

Link: https://doi.org/10.1016/..

9

Linear Time Construction of Indexable Elastic Founder Graph:

, In: Lecture Notes in Computer Science; Combinatorial Algorithms,

Rizzo, Nicola ; Mäkinen, Veli - p. 480-493 , 2022

Link: https://doi.org/10.1007/..

10

Algorithms and Complexity on Indexing Founder Graphs:

Equi, Massimo ; Norri, Tuukka ; Alanko, Jarno...
Algorithmica. 85 (2022) 6 - p. 1586-1623 , 2022

Link: https://doi.org/10.1007/..

11

Founder reconstruction enables scalable and seamless pangen..:

Norri, Tuukka ; Cazaux, Bastien ; Dönges, Saska...
Bioinformatics. 37 (2021) 24 - p. 4611-4619 , 2021

Link: https://doi.org/10.1093/..

12

Distributed hybrid-indexing of compressed pan-genomes for s..:

Maarala, Altti Ilari ; Arasalo, Ossi ; Valenzuela, Daniel...
PLOS ONE. 16 (2021) 8 - p. e0255260 , 2021

Link: https://doi.org/10.1371/..

13

Accurate spliced alignment of long RNA sequencing reads:

Sahlin, Kristoffer ; Mäkinen, Veli ; Robinson, Peter
Bioinformatics. 37 (2021) 24 - p. 4643-4651 , 2021

Link: https://doi.org/10.1093/..

14

Graphs Cannot Be Indexed in Polynomial Time for Sub-quadrat..:

, In: SOFSEM 2021: Theory and Practice of Computer Science; Lecture Notes in Computer Science,

Equi, Massimo ; Mäkinen, Veli ; Tomescu, Alexandru I. - p. 608-622 , 2021

Link: https://doi.org/10.1007/..

15

Bacterial genomic epidemiology with mixed samples:

Mäklin, Tommi ; Kallonen, Teemu ; Alanko, Jarno...
Microbial Genomics. 7 (2021) 11 - p. , 2021

Link: https://doi.org/10.1099/..