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Malbranke, Cyril
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1

Machine learning for evolutionary-based and physics-inspire..:

Malbranke, Cyril ; Bikard, David ; Cocco, Simona..
Current Opinion in Structural Biology.  80 (2023)  - p. 102571 , 2023
Link: https://doi.org/10.1016/..
 
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2

Computational design of novel Cas9 PAM-interacting domains ..:

Malbranke, Cyril ; Rostain, William ; Depardieu, Florence...
PLOS Computational Biology.  19 (2023)  11 - p. e1011621 , 2023
Link: https://doi.org/10.1371/..
 
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3

Improving sequence-based modeling of protein families using..:

Malbranke, Cyril ; Bikard, David ; Cocco, Simona..
Bioinformatics.  37 (2021)  22 - p. 4083-4090 , 2021
Link: https://doi.org/10.1093/..
 
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4

Computational protein design with evolutionary-based and ph..:

Malbranke, Cyril ; Bikard, David ; Cocco, Simona..
http://arxiv.org/abs/2208.13616.  , 2022
Link: http://arxiv.org/abs/220..
 
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5

Improving sequence-based modeling of protein families using..:

Malbranke, Cyril ; Bikard, David ; Cocco, Simona.
hal-03126381.  , 2021
Link: https://hal.archives-ouv..
 
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6

Improving sequence-based modeling of protein families using..:

Malbranke, Cyril ; Bikard, David ; Cocco, Simona.
hal-03126381.  , 2021
Link: https://hal.science/hal-..
 
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7

Improving sequence-based modeling of protein families using..:

Malbranke, Cyril ; Bikard, David ; Cocco, Simona.
hal-03126381.  , 2021
Link: https://hal.science/hal-..
 
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8

Improving sequence-based modeling of protein families using..:

Malbranke, Cyril ; Bikard, David ; Cocco, Simona.
hal-03126381.  , 2021
Link: https://hal.science/hal-..
 
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9

Improving sequence-based modeling of protein families using..:

Malbranke, Cyril ; Bikard, David ; Cocco, Simona.
hal-03126381.  , 2021
Link: https://hal.science/hal-..
 
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10

Constrained Langevin Dynamics as a sampling method:

Cyril Malbranke ; William Rostain ; Florence Depardieu...
doi:10.1371/journal.pcbi.1011621.g004.  , 2023
Link: https://doi.org/10.1371/..
 
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11

Strengths and Weaknesses of Scoring Methods:

Cyril Malbranke ; William Rostain ; Florence Depardieu...
doi:10.1371/journal.pcbi.1011621.g009.  , 2023
Link: https://doi.org/10.1371/..
 
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12

Correlation between SSL-RBM energy and experimental activit:

Cyril Malbranke ; William Rostain ; Florence Depardieu...
doi:10.1371/journal.pcbi.1011621.g007.  , 2023
Link: https://doi.org/10.1371/..
 
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13

Additional plots on assessments of computational Score:

Cyril Malbranke ; William Rostain ; Florence Depardieu...
doi:10.1371/journal.pcbi.1011621.s003.  , 2023
Link: https://doi.org/10.1371/..
 
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14

Experimental validation of chimeras between SpyCas9 and the..:

Cyril Malbranke ; William Rostain ; Florence Depardieu...
doi:10.1371/journal.pcbi.1011621.g001.  , 2023
Link: https://doi.org/10.1371/..
 
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15

RBM energy and structure scores predict sequence activity:

Cyril Malbranke ; William Rostain ; Florence Depardieu...
doi:10.1371/journal.pcbi.1011621.g008.  , 2023
Link: https://doi.org/10.1371/..
 
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