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Marand, Alexandre P.
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1

scifi-ATAC-seq: massive-scale single-cell chromatin accessi..:

Zhang, Xuan ; Marand, Alexandre P. ; Yan, Haidong.
Genome Biology.  25 (2024)  1 - p. , 2024
Link: https://doi.org/10.1186/..
 
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2

Leveraging Single-Cell Populations to Uncover the Genetic B..:

Minow, Mark A.A. ; Marand, Alexandre P. ; Schmitz, Robert J.
Annual Review of Genetics.  57 (2023)  1 - p. 297-319 , 2023
Link: https://doi.org/10.1146/..
 
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3

cis-Regulatory Elements in Plant Development, Adaptation, a..:

Marand, Alexandre P. ; Eveland, Andrea L. ; Kaufmann, Kerstin.
Annual Review of Plant Biology.  74 (2023)  1 - p. 111-137 , 2023
Link: https://doi.org/10.1146/..
 
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4

Modeling chromatin state from sequence across angiosperms u..:

Wrightsman, Travis ; Marand, Alexandre P. ; Crisp, Peter A...
The Plant Genome.  15 (2022)  3 - p. , 2022
Link: https://doi.org/10.1002/..
 
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5

A combinatorial indexing strategy for low-cost epigenomic p..:

Tu, Xiaoyu ; Marand, Alexandre P. ; Schmitz, Robert J..
Plant Communications.  3 (2022)  4 - p. 100308 , 2022
Link: https://doi.org/10.1016/..
 
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6

Single-cell analysis of cis-regulatory elements:

Marand, Alexandre P. ; Schmitz, Robert J.
Current Opinion in Plant Biology.  65 (2022)  - p. 102094 , 2022
Link: https://doi.org/10.1016/..
 
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7

Leveraging histone modifications to improve genome annotati..:

Mendieta, John Pablo ; Marand, Alexandre P ; Ricci, William A...
G3 Genes|Genomes|Genetics.  11 (2021)  10 - p. , 2021
Link: https://doi.org/10.1093/..
 
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8

De novo assembly, annotation, and comparative analysis of 2..:

Hufford, Matthew B. ; Seetharam, Arun S. ; Woodhouse, Margaret R....
Science.  373 (2021)  6555 - p. 655-662 , 2021
Link: https://doi.org/10.1126/..
 
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9

A cis-regulatory atlas in maize at single-cell resolution:

Marand, Alexandre P. ; Chen, Zongliang ; Gallavotti, Andrea.
Cell.  184 (2021)  11 - p. 3041-3055.e21 , 2021
Link: https://doi.org/10.1016/..
 
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10

Profiling single-cell chromatin accessibility in plants:

Marand, Alexandre P. ; Zhang, Xuan ; Nelson, Julie..
STAR Protocols.  2 (2021)  3 - p. 100737 , 2021
Link: https://doi.org/10.1016/..
 
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11

Quality control and evaluation of plant epigenomics data:

Schmitz, Robert J ; Marand, Alexandre P ; Zhang, Xuan...
The Plant Cell.  34 (2021)  1 - p. 503-513 , 2021
Link: https://doi.org/10.1093/..
 
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12

Stability of DNA methylation and chromatin accessibility in..:

Noshay, Jaclyn M ; Liang, Zhikai ; Zhou, Peng...
G3 Genes|Genomes|Genetics.  11 (2021)  8 - p. , 2021
Link: https://doi.org/10.1093/..
 
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13

Chromatin accessibility profiling methods:

Minnoye, Liesbeth ; Marinov, Georgi K. ; Krausgruber, Thomas...
Nature Reviews Methods Primers.  1 (2021)  1 - p. , 2021
Link: https://doi.org/10.1038/..
 
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14

Stable unmethylated DNA demarcates expressed genes and thei..:

Crisp, Peter A. ; Marand, Alexandre P. ; Noshay, Jaclyn M....
Proceedings of the National Academy of Sciences.  117 (2020)  38 - p. 23991-24000 , 2020
Link: https://doi.org/10.1073/..
 
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15

Identification of a novel base J binding protein complex in..:

Kieft, Rudo ; Zhang, Yang ; Marand, Alexandre P....
PLOS Genetics.  16 (2020)  2 - p. e1008390 , 2020
Link: https://doi.org/10.1371/..
 
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