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Mlýnský, Vojtěch
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1

Molecular dynamics simulations reveal the parallel stranded..:

Pokorná, Pavlína ; Mlýnský, Vojtěch ; Bussi, Giovanni..
International Journal of Biological Macromolecules.  261 (2024)  - p. 129712 , 2024
Link: https://doi.org/10.1016/..
 
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2

Comprehensive Assessment of Force-Field Performance in Mole..:

Knappeová, Barbora ; Mlýnský, Vojtěch ; Pykal, Martin...
Journal of Chemical Theory and Computation.  , 2024
Link: https://doi.org/10.1021/..
 
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3

Correction to "Sensitivity of the RNA Structure to Ion Cond..:

Kührová, Petra ; Mlýnský, Vojtěch ; Otyepka, Michal..
Journal of Chemical Information and Modeling.  64 (2024)  13 - p. 5356-5356 , 2024
Link: https://doi.org/10.1021/..
 
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4

Mechanical Stability and Unfolding Pathways of Parallel Tet..:

Zhang, Zhengyue ; Mlýnský, Vojtěch ; Krepl, Miroslav..
Journal of Chemical Information and Modeling.  64 (2024)  9 - p. 3896-3911 , 2024
Link: https://doi.org/10.1021/..
 
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5

Sensitivity of the RNA Structure to Ion Conditions as Probe..:

Kührová, Petra ; Mlýnský, Vojtěch ; Otyepka, Michal..
Journal of Chemical Information and Modeling.  63 (2023)  7 - p. 2133-2146 , 2023
Link: https://doi.org/10.1021/..
 
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6

Complexity of Guanine Quadruplex Unfolding Pathways Reveale..:

Stadlbauer, Petr ; Mlýnský, Vojtěch ; Krepl, Miroslav.
Journal of Chemical Information and Modeling.  63 (2023)  15 - p. 4716-4731 , 2023
Link: https://doi.org/10.1021/..
 
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7

Atomistic Picture of Opening–Closing Dynamics of DNA Hollid..:

Zhang, Zhengyue ; Šponer, Jiří ; Bussi, Giovanni...
Journal of Chemical Information and Modeling.  63 (2023)  9 - p. 2794-2809 , 2023
Link: https://doi.org/10.1021/..
 
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8

Simple Adjustment of Intranucleotide Base-Phosphate Interac..:

Mlýnský, Vojtěch ; Kührová, Petra ; Stadlbauer, Petr...
Journal of Chemical Theory and Computation.  19 (2023)  22 - p. 8423-8433 , 2023
Link: https://doi.org/10.1021/..
 
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9

Automatic Learning of Hydrogen-Bond Fixes in the AMBER RNA ..:

Fröhlking, Thorben ; Mlýnský, Vojtěch ; Janeček, Michal...
Journal of Chemical Theory and Computation.  18 (2022)  7 - p. 4490-4502 , 2022
Link: https://doi.org/10.1021/..
 
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10

Spontaneous binding of single-stranded RNAs to RRM proteins..:

Krepl, Miroslav ; Pokorná, Pavlína ; Mlýnský, Vojtěch..
Nucleic Acids Research.  50 (2022)  21 - p. 12480-12496 , 2022
Link: https://doi.org/10.1093/..
 
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11

Multiscale Modeling of Phosphate···π Contacts in RNA U-Turn..:

Mráziková, Klaudia ; Kruse, Holger ; Mlýnský, Vojtěch..
Journal of Chemical Information and Modeling.  62 (2022)  23 - p. 6182-6200 , 2022
Link: https://doi.org/10.1021/..
 
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12

Toward Convergence in Folding Simulations of RNA Tetraloops..:

Mlýnský, Vojtěch ; Janeček, Michal ; Kührová, Petra...
Journal of Chemical Theory and Computation.  18 (2022)  4 - p. 2642-2656 , 2022
Link: https://doi.org/10.1021/..
 
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13

W-RESP: Well-Restrained Electrostatic Potential-Derived Cha..:

Janeček, Michal ; Kührová, Petra ; Mlýnský, Vojtěch...
Journal of Chemical Theory and Computation.  17 (2021)  6 - p. 3495-3509 , 2021
Link: https://doi.org/10.1021/..
 
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14

Short-Range Imbalances in the AMBER Lennard-Jones Potential..:

Mráziková, Klaudia ; Šponer, Jiří ; Mlýnský, Vojtěch..
Journal of Chemical Information and Modeling.  61 (2021)  11 - p. 5644-5657 , 2021
Link: https://doi.org/10.1021/..
 
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15

UUCG RNA Tetraloop as a Formidable Force-Field Challenge fo..:

Mráziková, Klaudia ; Mlýnský, Vojtěch ; Kührová, Petra...
Journal of Chemical Theory and Computation.  16 (2020)  12 - p. 7601-7617 , 2020
Link: https://doi.org/10.1021/..
 
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