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Molloy, Erin
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1

Fast, parallel, and cache-friendly suffix array constructio:

Khan, Jamshed ; Rubel, Tobias ; Molloy, Erin..
Algorithms for Molecular Biology.  19 (2024)  1 - p. , 2024
Link: https://doi.org/10.1186/..
 
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2

Genetic and behavioral differences between above and below ..:

Bell, Katherine L. ; Noreuil, Anna ; Molloy, Erin K..
Heredity.  132 (2024)  5 - p. 221-231 , 2024
Link: https://doi.org/10.1038/..
 
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3

Dollo-CDP: a polynomial-time algorithm for the clade-constr..:

Dai, Junyan ; Rubel, Tobias ; Han, Yunheng.
Algorithms for Molecular Biology.  19 (2024)  1 - p. , 2024
Link: https://doi.org/10.1186/..
 
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4

Assessment of plasmids for relating the 2020 Salmonella ent..:

Commichaux, Seth ; Rand, Hugh ; Javkar, Kiran...
BMC Genomics.  24 (2023)  1 - p. , 2023
Link: https://doi.org/10.1186/..
 
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5

Quartets enable statistically consistent estimation of cell..:

Han, Yunheng ; Molloy, Erin K.
Algorithms for Molecular Biology.  18 (2023)  1 - p. , 2023
Link: https://doi.org/10.1186/..
 
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6

Improving quartet graph construction for scalable and accur..:

Han, Yunheng ; Molloy, Erin K
Genome Research.  , 2023
Link: https://doi.org/10.1101/..
 
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7

Single-cell methylation sequencing data reveal succinct met..:

Liu, Yuelin ; Li, Xuan Cindy ; Rashidi Mehrabadi, Farid...
Genome Research.  , 2023
Link: https://doi.org/10.1101/..
 
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8

Inferring population structure in biobank-scale genomic dat:

Chiu, Alec M. ; Molloy, Erin K. ; Tan, Zilong..
The American Journal of Human Genetics.  109 (2022)  4 - p. 727-737 , 2022
Link: https://doi.org/10.1016/..
 
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9

Advancing admixture graph estimation via maximum likelihood..:

Molloy, Erin K ; Durvasula, Arun ; Sankararaman, Sriram
Bioinformatics.  37 (2021)  Supplement_1 - p. i142-i150 , 2021
Link: https://doi.org/10.1093/..
 
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10

Using Robinson-Foulds supertrees in divide-and-conquer phyl..:

Yu, Xilin ; Le, Thien ; Christensen, Sarah A...
Algorithms for Molecular Biology.  16 (2021)  1 - p. , 2021
Link: https://doi.org/10.1186/..
 
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11

Corrigendum to: ASTRAL-Pro: Quartet-Based Species-Tree Infe..:

Zhang, Chao ; Scornavacca, Celine ; Molloy, Erin K.
Molecular Biology and Evolution.  38 (2021)  10 - p. 4655-4655 , 2021
Link: https://doi.org/10.1093/..
 
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12

Using Constrained-INC for Large-Scale Gene Tree and Species..:

Le, Thien ; Sy, Aaron ; Molloy, Erin K....
IEEE/ACM Transactions on Computational Biology and Bioinformatics.  18 (2021)  1 - p. 2-15 , 2021
Link: https://doi.org/10.1109/..
 
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13

TIPP2: metagenomic taxonomic profiling using phylogenetic m..:

Shah, Nidhi ; Molloy, Erin K ; Pop, Mihai..
Bioinformatics.  37 (2021)  13 - p. 1839-1845 , 2021
Link: https://doi.org/10.1093/..
 
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14

Theoretical and Practical Considerations when using Retroel..:

Molloy, Erin K ; Gatesy, John ; Springer, Mark S.
Systematic Biology.  71 (2021)  3 - p. 721-740 , 2021
Link: https://doi.org/10.1093/..
 
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15

FastMulRFS: fast and accurate species tree estimation under..:

Molloy, Erin K ; Warnow, Tandy
Bioinformatics.  36 (2020)  Supplement_1 - p. i57-i65 , 2020
Link: https://doi.org/10.1093/..
 
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