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Muggli, Martin
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1

P850: Accelerated optical genome mapping analysis with Stra..:

Cali, Damla Senol ; Anantharaman, Thomas ; Muggli, Martin...
Genetics in Medicine Open.  2 (2024)  - p. 101761 , 2024
Link: https://doi.org/10.1016/..
 
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2

eP379: Optical genome mapping for high throughput analysis ..:

Muggli, Martin ; Ramandi, Bahar ; Miller, Neil...
Genetics in Medicine.  24 (2022)  3 - p. S238 , 2022
Link: https://doi.org/10.1016/..
 
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3

8. Optical genome mapping analysis of FMR1 expansions in fr..:

Barseghyan, Hayk ; Muggli, Martin ; Ramandi, Bahar...
Cancer Genetics.  264-265 (2022)  - p. 3 , 2022
Link: https://doi.org/10.1016/..
 
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Fast and accurate correction of optical mapping data via sp..:

Salmela, Leena ; Mukherjee, Kingshuk ; Puglisi, Simon J..
Bioinformatics.  36 (2020)  9 - p. 2974-2974 , 2020
Link: https://doi.org/10.1093/..
 
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5

Fast and accurate correction of optical mapping data via sp..:

Salmela, Leena ; Mukherjee, Kingshuk ; Puglisi, Simon J...
Bioinformatics.  36 (2019)  3 - p. 682-689 , 2019
Link: https://doi.org/10.1093/..
 
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6

Hierarchical Hidden Markov models enable accurate and diver..:

Lakin, Steven M. ; Kuhnle, Alan ; Alipanahi, Bahar...
Communications Biology.  2 (2019)  1 - p. , 2019
Link: https://doi.org/10.1038/..
 
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7

Kohdista: an efficient method to index and query possible R..:

Muggli, Martin D. ; Puglisi, Simon J. ; Boucher, Christina
Algorithms for Molecular Biology.  14 (2019)  1 - p. , 2019
Link: https://doi.org/10.1186/..
 
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8

Building large updatable colored de Bruijn graphs via mergi..:

Muggli, Martin D ; Alipanahi, Bahar ; Boucher, Christina
Bioinformatics.  35 (2019)  14 - p. i51-i60 , 2019
Link: https://doi.org/10.1093/..
 
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9

Error correcting optical mapping data:

Mukherjee, Kingshuk ; Washimkar, Darshan ; Muggli, Martin D..
GigaScience.  7 (2018)  6 - p. , 2018
Link: https://doi.org/10.1093/..
 
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10

Succinct colored de Bruijn graphs:

Muggli, Martin D ; Bowe, Alexander ; Noyes, Noelle R...
Bioinformatics.  33 (2017)  20 - p. 3181-3187 , 2017
Link: https://doi.org/10.1093/..
 
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11

Misassembly detection using paired-end sequence reads and o..:

Muggli, Martin D. ; Puglisi, Simon J. ; Ronen, Roy.
Bioinformatics.  31 (2015)  12 - p. i80-i88 , 2015
Link: https://doi.org/10.1093/..
 
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12

Fast and accurate correction of optical mapping data via sp..:

Salmela, Leena ; Mukherjee, Kingshuk ; Puglisi, Simon J..
10.1093/bioinformatics/btz663.  , 2020
Link: http://hdl.handle.net/10..
 
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13

Meta-MARC Publication Code:

Lakin, Steven ; Kuhnle, Alan ; Alipanahi, Bahar...
doi:10.5281/zenodo.3255103.  , 2019
Link: https://zenodo.org/recor..
 
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14

Disentangled long-read de Bruijn graphs via optical maps:

Alipahani, Bahar ; Salmela, Leena ; Puglisi, Simon J..
17th International Workshop on Algorithms in Bioinformatics, WABI 2017.  , 2018
Link: http://hdl.handle.net/10..
 
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15

A Succinct Solution to Rmap Alignment:

Muggli, Martin D ; Puglisi, Simon J ; Boucher, Christina
Is Part Of LIPIcs, Volume 113, 18th International Workshop on Algorithms in Bioinformatics (WABI 2018).  , 2018
Link: https://doi.org/10.4230/..
 
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