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Murrugarra, David
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1

Modular construction of Boolean networks:

Wheeler, Matthew ; Kadelka, Claus ; Veliz-Cuba, Alan..
Physica D: Nonlinear Phenomena.  468 (2024)  - p. 134278 , 2024
Link: https://doi.org/10.1016/..
 
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2

Canalization reduces the nonlinearity of regulation in biol..:

Kadelka, Claus ; Murrugarra, David
npj Systems Biology and Applications.  10 (2024)  1 - p. , 2024
Link: https://doi.org/10.1038/..
 
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3

Cancer mutationscape: revealing the link between modular re..:

Plaugher, Daniel ; Murrugarra, David
npj Systems Biology and Applications.  10 (2024)  1 - p. , 2024
Link: https://doi.org/10.1038/..
 
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4

The nonlinearity of regulation in biological networks:

Manicka, Santosh ; Johnson, Kathleen ; Levin, Michael.
npj Systems Biology and Applications.  9 (2023)  1 - p. , 2023
Link: https://doi.org/10.1038/..
 
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5

Stability of linear Boolean networks:

Chandrasekhar, Karthik ; Kadelka, Claus ; Laubenbacher, Reinhard.
Physica D: Nonlinear Phenomena.  451 (2023)  - p. 133775 , 2023
Link: https://doi.org/10.1016/..
 
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6

Phenotype Control techniques for Boolean gene regulatory ne..:

Plaugher, Daniel ; Murrugarra, David
Bulletin of Mathematical Biology.  85 (2023)  10 - p. , 2023
Link: https://doi.org/10.1007/..
 
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7

Revealing the canalizing structure of Boolean functions: Al..:

Dimitrova, Elena ; Stigler, Brandilyn ; Kadelka, Claus.
Automatica.  146 (2022)  - p. 110630 , 2022
Link: https://doi.org/10.1016/..
 
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8

An information theoretic approach for the inference of Bool..:

Murrugarra, David ; Veliz-Cuba, Alan
Patterns.  3 (2022)  11 - p. 100617 , 2022
Link: https://doi.org/10.1016/..
 
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9

Uncovering potential interventions for pancreatic cancer pa..:

Plaugher, Daniel ; Aguilar, Boris ; Murrugarra, David
Journal of Theoretical Biology.  548 (2022)  - p. 111197 , 2022
Link: https://doi.org/10.1016/..
 
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10

HDAC Inhibitor Titration of Transcription and Axolotl Tail ..:

Voss, S. Randal ; Smith, Jeramiah J. ; Cecil, Raissa F....
Frontiers in Cell and Developmental Biology.  9 (2021)  - p. , 2021
Link: https://doi.org/10.3389/..
 
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11

Evolution of Cellular Differentiation: From Hypotheses to M..:

Márquez-Zacarías, Pedro ; Pineau, Rozenn M. ; Gomez, Marcella...
Trends in Ecology & Evolution.  36 (2021)  1 - p. 49-60 , 2021
Link: https://doi.org/10.1016/..
 
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12

Modeling the Pancreatic Cancer Microenvironment in Search o..:

Plaugher, Daniel ; Murrugarra, David
Bulletin of Mathematical Biology.  83 (2021)  11 - p. , 2021
Link: https://doi.org/10.1007/..
 
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13

Mathematical modeling of the Candida albicans yeast to hyph..:

Wooten, David J. ; Zañudo, Jorge Gómez Tejeda ; Murrugarra, David...
PLOS Computational Biology.  17 (2021)  3 - p. e1008690 , 2021
Link: https://doi.org/10.1371/..
 
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14

Quantifying the total effect of edge interventions in discr..:

Murrugarra, David ; Dimitrova, Elena
Automatica.  125 (2021)  - p. 109453 , 2021
Link: https://doi.org/10.1016/..
 
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15

Improving RNA secondary structure prediction via state infe..:

Willmott, Devin ; Murrugarra, David ; Ye, Qiang
Computational and Mathematical Biophysics.  8 (2020)  1 - p. 36-50 , 2020
Link: https://doi.org/10.1515/..
 
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