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Ouldridge, Thomas E.
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1

Editorial for the special issue on DNA computing and molecu..:

Ouldridge, Thomas E. ; Wickham, Shelley F. J.
Natural Computing.  , 2024
Link: https://doi.org/10.1007/..
 
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2

Kinetic Proofreading Can Enhance Specificity in a Nonenzyma..:

Mukherjee, Rakesh ; Sengar, Aditya ; Cabello-García, Javier.
Journal of the American Chemical Society.  , 2024
Link: https://doi.org/10.1021/..
 
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3

A universal method for analyzing copolymer growth:

Qureshi, Benjamin ; Juritz, Jordan ; Poulton, Jenny M...
The Journal of Chemical Physics.  158 (2023)  10 - p. , 2023
Link: https://doi.org/10.1063/..
 
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4

Integral feedback in synthetic biology: negative-equilibriu..:

Plesa, Tomislav ; Dack, Alexander ; Ouldridge, Thomas E.
Journal of Mathematical Chemistry.  61 (2023)  9 - p. 1980-2018 , 2023
Link: https://doi.org/10.1007/..
 
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5

Thermodynamics of deterministic finite automata operating l..:

Ouldridge, Thomas E ; Wolpert, David H
New Journal of Physics.  25 (2023)  12 - p. 123013 , 2023
Link: https://doi.org/10.1088/..
 
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6

Evaluating DFHBI-Responsive RNA Light-Up Aptamers as Fluore..:

Climent-Catala, Alicia ; Casas-Rodrigo, Ivan ; Iyer, Suhasini..
ACS Synthetic Biology.  12 (2023)  12 - p. 3754-3765 , 2023
Link: https://doi.org/10.1021/..
 
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7

Simulation of reversible molecular mechanical logic gates a..:

Seet, Ian ; Ouldridge, Thomas E. ; Doye, Jonathan P. K.
Physical Review E.  107 (2023)  2 - p. , 2023
Link: https://doi.org/10.1103/..
 
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8

Free energy landscapes of DNA and its assemblies: perspecti..:

, In: Frontiers of Nanoscience; Energy Landscapes of Nanoscale Systems,
Doye, Jonathan P.K. ; Louis, Ard A. ; Schreck, John S.... - p. 195-210 , 2022
Link: https://doi.org/10.1016/..
 
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9

Building an RNA-Based Toggle Switch Using Inhibitory RNA Ap..:

Climent-Catala, Alicia ; Ouldridge, Thomas E. ; Stan, Guy-Bart V..
ACS Synthetic Biology.  11 (2022)  2 - p. 562-569 , 2022
Link: https://doi.org/10.1021/..
 
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10

Minimal mechanism for cyclic templating of length-controlle..:

Juritz, Jordan ; Poulton, Jenny M. ; Ouldridge, Thomas E.
The Journal of Chemical Physics.  156 (2022)  7 - p. , 2022
Link: https://doi.org/10.1063/..
 
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11

The stability and number of nucleating interactions determi..:

Hertel, Sophie ; Spinney, Richard E ; Xu, Stephanie Y...
Nucleic Acids Research.  50 (2022)  14 - p. 7829-7841 , 2022
Link: https://doi.org/10.1093/..
 
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12

Handhold-Mediated Strand Displacement: A Nucleic Acid Based..:

Cabello-Garcia, Javier ; Bae, Wooli ; Stan, Guy-Bart V..
ACS Nano.  15 (2021)  2 - p. 3272-3283 , 2021
Link: https://doi.org/10.1021/..
 
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13

Edge-effects dominate copying thermodynamics for finite-len..:

Poulton, Jenny M ; Ouldridge, Thomas E
New Journal of Physics.  23 (2021)  6 - p. 063061 , 2021
Link: https://doi.org/10.1088/..
 
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14

Optimizing enzymatic catalysts for rapid turnover of substr..:

Deshpande, Abhishek ; Ouldridge, Thomas E.
Biological Cybernetics.  114 (2020)  6 - p. 653-668 , 2020
Link: https://doi.org/10.1007/..
 
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15

Modeling DNA-Strand Displacement Reactions in the Presence ..:

Irmisch, Patrick ; Ouldridge, Thomas E. ; Seidel, Ralf
Journal of the American Chemical Society.  142 (2020)  26 - p. 11451-11463 , 2020
Link: https://doi.org/10.1021/..
 
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