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Petrey, Donald
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1

ZEPPI: Proteome-scale sequence-based evaluation of protein–..:

Zhao, Haiqing ; Petrey, Donald ; Murray, Diana.
Proceedings of the National Academy of Sciences.  121 (2024)  21 - p. , 2024
Link: https://doi.org/10.1073/..
 
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2

PrePCI: A structure‐ and chemical similarity‐informed datab..:

Trudeau, Stephen J. ; Hwang, Howook ; Mathur, Deepika...
Protein Science.  32 (2023)  4 - p. , 2023
Link: https://doi.org/10.1002/..
 
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3

PrePPI: A Structure Informed Proteome-wide Database of Prot..:

Petrey, Donald ; Zhao, Haiqing ; Trudeau, Stephen J..
Journal of Molecular Biology.  435 (2023)  14 - p. 168052 , 2023
Link: https://doi.org/10.1016/..
 
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4

Integrating 3D structural information into systems biology:

Murray, Diana ; Petrey, Donald ; Honig, Barry
Journal of Biological Chemistry.  296 (2021)  - p. 100562 , 2021
Link: https://doi.org/10.1016/..
 
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5

Structure-based prediction of ligand–protein interactions o..:

Hwang, Howook ; Dey, Fabian ; Petrey, Donald.
Proceedings of the National Academy of Sciences.  114 (2017)  52 - p. 13685-13690 , 2017
Link: https://doi.org/10.1073/..
 
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6

Structure-based prediction of ligand–protein interactions o..:

Hwang, Howook ; Dey, Fabian ; Petrey, Donald.
Proceedings of the National Academy of Sciences of the United States of America.  114 (2017)  52 - p. 13685-13690 , 2017
Link: https://www.jstor.org/st..
 
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7

A computational interactome and functional annotation for t..:

Garzón, José Ignacio ; Deng, Lei ; Murray, Diana...
eLife.  5 (2016)  - p. , 2016
Link: https://doi.org/10.7554/..
 
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8

A hybrid method for protein–protein interface prediction:

Hwang, Howook ; Petrey, Donald ; Honig, Barry
Protein Science.  25 (2015)  1 - p. 159-165 , 2015
Link: https://doi.org/10.1002/..
 
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9

Predicting Peptide-Mediated Interactions on a Genome-Wide S..:

Chen, T. Scott ; Petrey, Donald ; Garzon, Jose Ignacio..
PLOS Computational Biology.  11 (2015)  5 - p. e1004248 , 2015
Link: https://doi.org/10.1371/..
 
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10

Template-based prediction of protein function:

Petrey, Donald ; Chen, T Scott ; Deng, Lei...
Current Opinion in Structural Biology.  32 (2015)  - p. 33-38 , 2015
Link: https://doi.org/10.1016/..
 
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11

Structural Bioinformatics of the Interactome:

Petrey, Donald ; Honig, Barry
Annual Review of Biophysics.  43 (2014)  1 - p. 193-210 , 2014
Link: https://doi.org/10.1146/..
 
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12

180 Integrating structural and systems biology: structure-b..:

Zhang, Qiangfeng Cliff ; Petrey, Donald ; Honig, Barry
Journal of Biomolecular Structure and Dynamics.  31 (2013)  sup1 - p. 116-116 , 2013
Link: https://doi.org/10.1080/..
 
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13

Correction: Corrigendum: Structure-based prediction of prot..:

Zhang, Qiangfeng Cliff ; Petrey, Donald ; Deng, Lei...
Nature.  495 (2013)  7439 - p. 127-127 , 2013
Link: https://doi.org/10.1038/..
 
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14

Toward a "Structural BLAST": Using structural relationships..:

Dey, Fabian ; Cliff Zhang, Qiangfeng ; Petrey, Donald.
Protein Science.  22 (2013)  4 - p. 359-366 , 2013
Link: https://doi.org/10.1002/..
 
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15

Structure-based prediction of protein–protein interactions ..:

Zhang, Qiangfeng Cliff ; Petrey, Donald ; Deng, Lei...
Nature.  490 (2012)  7421 - p. 556-560 , 2012
Link: https://doi.org/10.1038/..
 
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