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Phaneuf, Patrick V
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1

BGCFlow: systematic pangenome workflow for the analysis of ..:

Nuhamunada, Matin ; Mohite, Omkar S ; Phaneuf, Patrick V..
Nucleic Acids Research.  52 (2024)  10 - p. 5478-5495 , 2024
Link: https://doi.org/10.1093/..
 
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2

Escherichia coli non-coding regulatory regions are highly c..:

Lamoureux, Cameron R ; Phaneuf, Patrick V ; Palsson, Bernhard O.
NAR Genomics and Bioinformatics.  6 (2024)  2 - p. , 2024
Link: https://doi.org/10.1093/..
 
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3

Laboratory evolution, transcriptomics, and modeling reveal ..:

Rychel, Kevin ; Tan, Justin ; Patel, Arjun...
Cell Reports.  42 (2023)  9 - p. 113105 , 2023
Link: https://doi.org/10.1016/..
 
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4

Laboratory evolution reveals general and specific tolerance..:

Lennen, Rebecca M. ; Lim, Hyun Gyu ; Jensen, Kristian...
Metabolic Engineering.  76 (2023)  - p. 179-192 , 2023
Link: https://doi.org/10.1016/..
 
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5

Laboratory evolution of synthetic electron transport system..:

Anand, Amitesh ; Patel, Arjun ; Chen, Ke...
Nature Communications.  13 (2022)  1 - p. , 2022
Link: https://doi.org/10.1038/..
 
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6

Escherichia coli Data-Driven Strain Design Using Aggregated..:

Phaneuf, Patrick V. ; Zielinski, Daniel C. ; Yurkovich, James T....
ACS Synthetic Biology.  10 (2021)  12 - p. 3379-3395 , 2021
Link: https://doi.org/10.1021/..
 
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7

iModulonDB: a knowledgebase of microbial transcriptional re..:

Rychel, Kevin ; Decker, Katherine ; Sastry, Anand V...
Nucleic Acids Research.  49 (2020)  D1 - p. D112-D120 , 2020
Link: https://doi.org/10.1093/..
 
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8

Kinetic profiling of metabolic specialists demonstrates sta..:

Heckmann, David ; Campeau, Anaamika ; Lloyd, Colton J....
Proceedings of the National Academy of Sciences.  117 (2020)  37 - p. 23182-23190 , 2020
Link: https://doi.org/10.1073/..
 
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9

Adaptive laboratory evolution of Escherichia coli under aci..:

Du, Bin ; Olson, Connor A. ; Sastry, Anand V....
Microbiology.  166 (2020)  2 - p. 141-148 , 2020
Link: https://doi.org/10.1099/..
 
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10

Kinetic profiling of metabolic specialists demonstrates sta..:

Heckmann, David ; Campeau, Anaamika ; Lloyd, Colton J....
Proceedings of the National Academy of Sciences of the United States of America.  117 (2020)  37 - p. 23182-23190 , 2020
Link: https://www.jstor.org/st..
 
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11

The Bitome: digitized genomic features reveal fundamental g..:

Lamoureux, Cameron R ; Choudhary, Kumari Sonal ; King, Zachary A...
Nucleic Acids Research.  48 (2020)  18 - p. 10157-10163 , 2020
Link: https://doi.org/10.1093/..
 
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12

Causal mutations from adaptive laboratory evolution are out..:

Phaneuf, Patrick V. ; Yurkovich, James T. ; Heckmann, David...
BMC Genomics.  21 (2020)  1 - p. , 2020
Link: https://doi.org/10.1186/..
 
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13

Adaptive evolution reveals a tradeoff between growth rate a..:

Anand, Amitesh ; Chen, Ke ; Yang, Laurence...
Proceedings of the National Academy of Sciences of the United States of America.  116 (2019)  50 - p. 25287-25292 , 2019
Link: https://www.jstor.org/st..
 
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14

Adaptive evolution reveals a tradeoff between growth rate a..:

Anand, Amitesh ; Chen, Ke ; Yang, Laurence...
Proceedings of the National Academy of Sciences.  116 (2019)  50 - p. 25287-25292 , 2019
Link: https://doi.org/10.1073/..
 
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15

The genetic basis for adaptation of model-designed syntroph..:

Lloyd, Colton J. ; King, Zachary A. ; Sandberg, Troy E....
PLOS Computational Biology.  15 (2019)  3 - p. e1006213 , 2019
Link: https://doi.org/10.1371/..
 
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