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Portik, Daniel
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1

Knowledge-based versus deep learning based treatment planni..:

Portik, Daniel ; Clementel, Enrico ; Krayenbühl, Jérôme...
Physics and Imaging in Radiation Oncology.  29 (2024)  - p. 100539 , 2024
Link: https://doi.org/10.1016/..
 
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2

Professional development through mentoring: Final evaluatio..:

Petit, Steven F. ; Portik, Daniel ; Abravan, Azadeh...
Radiotherapy and Oncology.  195 (2024)  - p. 110226 , 2024
Link: https://doi.org/10.1016/..
 
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3

Longitudinal, Multi-Platform Metagenomics Yields a High-Qua..:

Saak, Christina C. ; Pierce, Emily C. ; Dinh, Cong B....
mSystems.  8 (2023)  1 - p. , 2023
Link: https://doi.org/10.1128/..
 
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4

Metagenome assembly of high-fidelity long reads with hifias..:

Feng, Xiaowen ; Cheng, Haoyu ; Portik, Daniel.
Nature Methods.  19 (2022)  6 - p. 671-674 , 2022
Link: https://doi.org/10.1038/..
 
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5

Diversity and Evolution of Frog Visual Opsins: Spectral Tun..:

Schott, Ryan K ; Fujita, Matthew K ; Streicher, Jeffrey W...
Molecular Biology and Evolution.  41 (2024)  4 - p. , 2024
Link: https://doi.org/10.1093/..
 
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6

Continent-wide recent emergence of a global pathogen in Afr..:

Ghose, Sonia L. ; Yap, Tiffany A. ; Byrne, Allison Q....
Frontiers in Conservation Science.  4 (2023)  - p. , 2023
Link: https://doi.org/10.3389/..
 
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7

Redefining Possible: Combining Phylogenomic and Supersparse..:

Portik, Daniel M ; Streicher, Jeffrey W ; Blackburn, David C...
Molecular Biology and Evolution.  40 (2023)  5 - p. , 2023
Link: https://doi.org/10.1093/..
 
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8

A high-quality Ixodes scapularis genome advances tick scien..:

De, Sandip ; Kingan, Sarah B. ; Kitsou, Chrysoula...
Nature Genetics.  55 (2023)  2 - p. 301-311 , 2023
Link: https://doi.org/10.1038/..
 
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9

Frog phylogeny: A time-calibrated, species-level tree based..:

Portik, Daniel M. ; Streicher, Jeffrey W. ; Wiens, John J.
Molecular Phylogenetics and Evolution.  188 (2023)  - p. 107907 , 2023
Link: https://doi.org/10.1016/..
 
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10

Direct haplotype-resolved 5-base HiFi sequencing for genome..:

Cheung, Warren A. ; Johnson, Adam F. ; Rowell, William J....
Nature Communications.  14 (2023)  1 - p. , 2023
Link: https://doi.org/10.1038/..
 
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11

Evaluation of taxonomic classification and profiling method..:

Portik, Daniel M. ; Brown, C. Titus ; Pierce-Ward, N. Tessa
BMC Bioinformatics.  23 (2022)  1 - p. , 2022
Link: https://doi.org/10.1186/..
 
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12

Generating lineage-resolved, complete metagenome-assembled ..:

Bickhart, Derek M. ; Kolmogorov, Mikhail ; Tseng, Elizabeth...
Nature Biotechnology.  40 (2022)  5 - p. 711-719 , 2022
Link: https://doi.org/10.1038/..
 
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13

Finding the right fit: evaluation of short-read and long-re..:

Gehrig, Jeanette L. ; Portik, Daniel M. ; Driscoll, Mark D....
Microbial Genomics.  8 (2022)  3 - p. , 2022
Link: https://doi.org/10.1099/..
 
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14

Phylogeography and population genetics of a widespread cold..:

Tonione, Maria Adelena ; Bi, Ke ; Dunn, Robert R....
Molecular Ecology.  31 (2022)  18 - p. 4884-4899 , 2022
Link: https://doi.org/10.1111/..
 
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15

FrogCap: A modular sequence capture probe‐set for phylogeno..:

Hutter, Carl R. ; Cobb, Kerry A. ; Portik, Daniel M....
Molecular Ecology Resources.  22 (2021)  3 - p. 1100-1119 , 2021
Link: https://doi.org/10.1111/..
 
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