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Pupko, Tal
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1

The Tree Reconstruction Game: Phylogenetic Reconstruction U..:

Azouri, Dana ; Granit, Oz ; Alburquerque, Michael...
Molecular Biology and Evolution.  41 (2024)  6 - p. , 2024
Link: https://doi.org/10.1093/..
 
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2

Macroevolutionary Dynamics in Micro-organisms: Generalists ..:

Padfield, Daniel ; Kay, Suzanne ; Vos, Rutger...
Molecular Biology and Evolution.  41 (2024)  5 - p. , 2024
Link: https://doi.org/10.1093/..
 
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3

The Expected Behaviors of Posterior Predictive Tests and Th..:

Fabreti, Luiza Guimarães ; Coghill, Lyndon M ; Thomson, Robert C...
Molecular Biology and Evolution.  41 (2024)  3 - p. , 2024
Link: https://doi.org/10.1093/..
 
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4

Effect of tokenization on transformers for biological seque..:

Dotan, Edo ; Jaschek, Gal ; Pupko, Tal..
Bioinformatics.  40 (2024)  4 - p. , 2024
Link: https://doi.org/10.1093/..
 
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5

Statistical framework to determine indel-length distributio:

Wygoda, Elya ; Loewenthal, Gil ; Moshe, Asher...
Bioinformatics.  40 (2024)  2 - p. , 2024
Link: https://doi.org/10.1093/..
 
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6

Evolution of myxozoan mitochondrial genomes: insights from ..:

Sandberg, Tatiana Orli Milkewitz ; Yahalomi, Dayana ; Bracha, Noam...
BMC Genomics.  25 (2024)  1 - p. , 2024
Link: https://doi.org/10.1186/..
 
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7

Genetic and Functional Diversity Help Explain Pathogenic, W..:

Pena, Michelle M ; Bhandari, Rishi ; Bowers, Robert M...
Genome Biology and Evolution.  16 (2024)  4 - p. , 2024
Link: https://doi.org/10.1093/..
 
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8

Substitution Models of Protein Evolution with Selection on ..:

Ferreiro, David ; Khalil, Ruqaiya ; Sousa, Sergio F..
Molecular Biology and Evolution.  41 (2024)  2 - p. , 2024
Link: https://doi.org/10.1093/..
 
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9

Comparison of Bayesian Coalescent Skyline Plot Models for I..:

Billenstein, Ronja J ; Höhna, Sebastian ; Pupko, Tal
Molecular Biology and Evolution.  41 (2024)  5 - p. , 2024
Link: https://doi.org/10.1093/..
 
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10

A machine-learning-based alternative to phylogenetic bootst..:

Ecker, Noa ; Huchon, Dorothée ; Mansour, Yishay..
Bioinformatics.  40 (2024)  Supplement_1 - p. i208-i217 , 2024
Link: https://doi.org/10.1093/..
 
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11

GenomeFLTR: filtering reads made easy:

Dotan, Edo ; Alburquerque, Michael ; Wygoda, Elya..
Nucleic Acids Research.  51 (2023)  W1 - p. W232-W236 , 2023
Link: https://doi.org/10.1093/..
 
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12

Using evolutionary data to make sense of macromolecules wit..:

Yariv, Barak ; Yariv, Elon ; Kessel, Amit...
Protein Science.  32 (2023)  3 - p. , 2023
Link: https://doi.org/10.1002/..
 
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13

Inferring the Direction of Introgression Using Genomic Sequ..:

Thawornwattana, Yuttapong ; Huang, Jun ; Flouri, Tomáš...
Molecular Biology and Evolution.  40 (2023)  8 - p. , 2023
Link: https://doi.org/10.1093/..
 
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14

Complete genome sequence of an Israeli isolate of Xanthomon..:

Wagner, Naama ; Ben-Meir, Daniella ; Teper, Doron.
Frontiers in Plant Science.  14 (2023)  - p. , 2023
Link: https://doi.org/10.3389/..
 
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15

Comparative sequence analysis of pPATH pathogenicity plasmi..:

Geraffi, Naama ; Gupta, Priya ; Wagner, Naama...
Frontiers in Plant Science.  14 (2023)  - p. , 2023
Link: https://doi.org/10.3389/..
 
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