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Razaghi-Moghadam, Zahra
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1

Prediction and integration of metabolite-protein interactio..:

Habibpour, Mahdis ; Razaghi-Moghadam, Zahra ; Nikoloski, Zoran
Metabolic Engineering.  82 (2024)  - p. 216-224 , 2024
Link: https://doi.org/10.1016/..
 
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2

Data integration across conditions improves turnover number..:

Wendering, Philipp ; Arend, Marius ; Razaghi-Moghadam, Zahra.
Nature Communications.  14 (2023)  1 - p. , 2023
Link: https://doi.org/10.1038/..
 
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3

Maximizing multi-reaction dependencies provides more accura..:

Hashemi, Seirana ; Razaghi-Moghadam, Zahra ; Nikoloski, Zoran.
PLOS Computational Biology.  19 (2023)  9 - p. e1011489 , 2023
Link: https://doi.org/10.1371/..
 
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4

Prediction of metabolite–protein interactions based on inte..:

Soleymani Babadi, Fayaz ; Razaghi-Moghadam, Zahra ; Zare-Mirakabad, Fatemeh..
Bioinformatics Advances.  3 (2023)  1 - p. , 2023
Link: https://doi.org/10.1093/..
 
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5

Optogenetic control of Cdc48 for dynamic metabolic engineer..:

Bezold, Filipp ; Scheffer, Johannes ; Wendering, Philipp...
Metabolic Engineering.  79 (2023)  - p. 97-107 , 2023
Link: https://doi.org/10.1016/..
 
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6

Relative flux trade-offs and optimization of metabolic netw..:

Hashemi, Seirana ; Razaghi-Moghadam, Zahra ; Laitinen, Roosa A.E..
Computational and Structural Biotechnology Journal.  20 (2022)  - p. 3963-3971 , 2022
Link: https://doi.org/10.1016/..
 
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7

Identification of flux trade-offs in metabolic networks:

Hashemi, Seirana ; Razaghi-Moghadam, Zahra ; Nikoloski, Zoran
Scientific Reports.  11 (2021)  1 - p. , 2021
Link: https://doi.org/10.1038/..
 
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8

Combination of network and molecule structure accurately pr..:

Razaghi-Moghadam, Zahra ; Sokolowska, Ewelina M. ; Sowa, Marcin A...
Computational and Structural Biotechnology Journal.  19 (2021)  - p. 2170-2178 , 2021
Link: https://doi.org/10.1016/..
 
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9

Characterization of effects of genetic variants via genome-..:

Tong, Hao ; Küken, Anika ; Razaghi-Moghadam, Zahra.
Cellular and Molecular Life Sciences.  78 (2021)  12 - p. 5123-5138 , 2021
Link: https://doi.org/10.1007/..
 
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10

Reaction lumping in metabolic networks for application with..:

Seep, Lea ; Razaghi-Moghadam, Zahra ; Nikoloski, Zoran
Scientific Reports.  11 (2021)  1 - p. , 2021
Link: https://doi.org/10.1038/..
 
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11

Integration of relative metabolomics and transcriptomics ti..:

Pries, Christopher ; Razaghi-Moghadam, Zahra ; Kopka, Joachim.
Scientific Reports.  11 (2021)  1 - p. , 2021
Link: https://doi.org/10.1038/..
 
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12

Maximization of non-idle enzymes improves the coverage of t..:

Xu, Rudan ; Razaghi-Moghadam, Zahra ; Nikoloski, Zoran.
Bioinformatics.  37 (2021)  21 - p. 3848-3855 , 2021
Link: https://doi.org/10.1093/..
 
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13

GeneReg: a constraint-based approach for design of feasible..:

Razaghi-Moghadam, Zahra ; Nikoloski, Zoran ; Jinbo, Xu
Bioinformatics.  37 (2020)  12 - p. 1717-1723 , 2020
Link: https://doi.org/10.1093/..
 
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14

Supervised learning of gene-regulatory networks based on gr..:

Razaghi-Moghadam, Zahra ; Nikoloski, Zoran
npj Systems Biology and Applications.  6 (2020)  1 - p. , 2020
Link: https://doi.org/10.1038/..
 
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15

A systematic survey of centrality measures for protein-prot..:

Ashtiani, Minoo ; Salehzadeh-Yazdi, Ali ; Razaghi-Moghadam, Zahra...
BMC Systems Biology.  12 (2018)  1 - p. , 2018
Link: https://doi.org/10.1186/..
 
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