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Rob Egan
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1

Exabiome: Advancing Microbial Science through Exascale Comp..:

Hofmeyr, Steven ; Buluç, Aydin ; Riley, Robert...
Computing in Science & Engineering.  , 2024
Link: https://doi.org/10.1109/..
 
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2

Terabase-Scale Coassembly of a Tropical Soil Microbiome:

Riley, Robert ; Bowers, Robert M. ; Camargo, Antonio Pedro...
Microbiology Spectrum.  11 (2023)  4 - p. , 2023
Link: https://doi.org/10.1128/..
 
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3

Genomic Features Predict Bacterial Life History Strategies ..:

Barnett, Samuel E. ; Egan, Rob ; Foster, Brian...
mBio.  14 (2023)  2 - p. , 2023
Link: https://doi.org/10.1128/..
 
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4

Designing Efficient SIMD Kernels for High Performance Seque..:

, In: 2023 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW),
Popovici, Doru Thom ; Awan, Muaaz Gul ; Guidi, Giulia... - p. 167-176 , 2023
Link: https://doi.org/10.1109/..
 
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5

Persistent memory as an effective alternative to random acc..:

Sun, Jingchao ; Qiu, Zhining ; Egan, Rob...
BMC Bioinformatics.  23 (2022)  1 - p. , 2022
Link: https://doi.org/10.1186/..
 
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6

Critical Assessment of Metagenome Interpretation: the secon..:

Meyer, Fernando ; Fritz, Adrian ; Deng, Zhi-Luo...
Nature Methods.  19 (2022)  4 - p. 429-440 , 2022
Link: https://doi.org/10.1038/..
 
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7

Accelerating large scale de novo metagenome assembly using ..:

, In: Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis,
Awan, Muaaz Gul ; Hofmeyr, Steven ; Egan, Rob... - p. 1-11 , 2021
Link: https://dl.acm.org/doi/1..
 
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8

The parallelism motifs of genomic data analysis:

Yelick, Katherine ; Buluç, Aydın ; Awan, Muaaz...
Philosophical Transactions: Mathematical, Physical and Engineering Sciences.  378 (2020)  2166 - p. 1-17 , 2020
Link: https://www.jstor.org/st..
 
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9

Terabase-scale metagenome coassembly with MetaHipMer:

Hofmeyr, Steven ; Egan, Rob ; Georganas, Evangelos...
Scientific Reports.  10 (2020)  1 - p. , 2020
Link: https://doi.org/10.1038/..
 
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10

MetaBAT 2: an adaptive binning algorithm for robust and eff..:

Kang, Dongwan D. ; Li, Feng ; Kirton, Edward...
PeerJ.  7 (2019)  - p. e7359 , 2019
Link: https://doi.org/10.7717/..
 
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11

De novo Nanopore read quality improvement using deep learni..:

LaPierre, Nathan ; Egan, Rob ; Wang, Wei.
BMC Bioinformatics.  20 (2019)  1 - p. , 2019
Link: https://doi.org/10.1186/..
 
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12

Extreme scale de novo metagenome assembly:

, In: Proceedings of the International Conference for High Performance Computing, Networking, Storage, and Analysis,
Georganas, Evangelos ; Egan, Rob ; Hofmeyr, Steven... - p. 1-13 , 2018
Link: https://dl.acm.org/doi/1..
 
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13

MerBench : PGAS Benchmarks for High Performance Genome A..:

, In: Proceedings of the Second Annual PGAS Applications Workshop,
Georganas, Evangelos ; Ellis, Marquita ; Egan, Rob... - p. 1-4 , 2017
Link: https://dl.acm.org/doi/1..
 
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14

Ecogenomics of virophages and their giant virus hosts asses..:

Roux, Simon ; Chan, Leong-Keat ; Egan, Rob...
Nature Communications.  8 (2017)  1 - p. , 2017
Link: https://doi.org/10.1038/..
 
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15

HipMer : an extreme-scale de novo genome assembler:

, In: Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis,
Georganas, Evangelos ; Buluç, Aydın ; Chapman, Jarrod... - p. 1-11 , 2015
Link: https://dl.acm.org/doi/1..
 
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