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Sauro, Herbert M.
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1

50 Years of metabolic control analysis:

Sauro, Herbert M.
Interface Focus.  14 (2024)  1 - p. , 2024
Link: https://doi.org/10.1098/..
 
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2

MakeSBML: a tool for converting between Antimony and SBML:

Jardine, Bartholomew E. ; Smith, Lucian P. ; Sauro, Herbert M.
Journal of Integrative Bioinformatics.  21 (2024)  1 - p. , 2024
Link: https://doi.org/10.1515/..
 
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3

Use of interactive mathematical simulations in Fundamentals..:

Jakubowski, Henry V. ; Agnew, Henry ; Jardine, Bartholomew.
Biochemistry and Molecular Biology Education.  52 (2024)  4 - p. 426-435 , 2024
Link: https://doi.org/10.1002/..
 
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4

Generating synthetic signaling networks for in silico model..:

Xu, Jin ; Wiley, H. Steven ; Sauro, Herbert M.
Journal of Theoretical Biology.  593 (2024)  - p. 111901 , 2024
Link: https://doi.org/10.1016/..
 
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5

Design patterns of biological cells:

Andrews, Steven S. ; Wiley, H. Steven ; Sauro, Herbert M.
BioEssays.  46 (2024)  3 - p. , 2024
Link: https://doi.org/10.1002/..
 
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6

Systems-Level Modeling for CRISPR-Based Metabolic Engineeri..:

Cardiff, Ryan A. L. ; Carothers, James M. ; Zalatan, Jesse G..
ACS Synthetic Biology.  , 2024
Link: https://doi.org/10.1021/..
 
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7

Standards, dissemination, and best practices in systems bio..:

Shin, Janis ; Porubsky, Veronica ; Carothers, James.
Current Opinion in Biotechnology.  81 (2023)  - p. 102922 , 2023
Link: https://doi.org/10.1016/..
 
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8

Cesium: A public database of evolved oscillatory reaction n..:

Tatka, Lillian T. ; Luk, Wesley ; Elston, Timothy C...
Biosystems.  224 (2023)  - p. 104836 , 2023
Link: https://doi.org/10.1016/..
 
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9

Whole-cell metabolic control analysis:

Bruggeman, Frank J. ; Remeijer, Maaike ; Droste, Maarten...
Biosystems.  234 (2023)  - p. 105067 , 2023
Link: https://doi.org/10.1016/..
 
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10

SBcoyote: An extensible Python-based reaction editor and vi..:

Xu, Jin ; Geng, Gary ; Nguyen, Nhan D....
Biosystems.  232 (2023)  - p. 105001 , 2023
Link: https://doi.org/10.1016/..
 
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11

Adapting modeling and simulation credibility standards to c..:

Tatka, Lillian T. ; Smith, Lucian P. ; Hellerstein, Joseph L..
Journal of Translational Medicine.  21 (2023)  1 - p. , 2023
Link: https://doi.org/10.1186/..
 
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12

Tissue Forge: Interactive biological and biophysics simulat..:

Sego, T. J. ; Sluka, James P. ; Sauro, Herbert M...
PLOS Computational Biology.  19 (2023)  10 - p. e1010768 , 2023
Link: https://doi.org/10.1371/..
 
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13

VSCode-Antimony: a source editor for building, analyzing, a..:

Ma, Steve ; Fan, Longxuan ; Konanki, Sai Anish...
Bioinformatics.  39 (2023)  12 - p. , 2023
Link: https://doi.org/10.1093/..
 
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14

An automated model annotation system (AMAS) for SBML models:

Shin, Woosub ; Gennari, John H ; Hellerstein, Joseph L..
Bioinformatics.  39 (2023)  11 - p. , 2023
Link: https://doi.org/10.1093/..
 
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15

SBMLDiagrams: a python package to process and visualize SBM..:

Xu, Jin ; Jiang, Jessie ; Sauro, Herbert M.
Bioinformatics.  39 (2022)  1 - p. , 2022
Link: https://doi.org/10.1093/..
 
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