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Shafin, Kishwar
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1

Scalable Nanopore sequencing of human genomes provides a co..:

Kolmogorov, Mikhail ; Billingsley, Kimberley J. ; Mastoras, Mira...
Nature Methods.  20 (2023)  10 - p. 1483-1492 , 2023
Link: https://doi.org/10.1038/..
 
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2

DeepConsensus improves the accuracy of sequences with a gap..:

Baid, Gunjan ; Cook, Daniel E. ; Shafin, Kishwar...
Nature Biotechnology.  , 2022
Link: https://doi.org/10.1038/..
 
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3

PrecisionFDA Truth Challenge V2: Calling variants from shor..:

Olson, Nathan D. ; Wagner, Justin ; McDaniel, Jennifer...
Cell Genomics.  2 (2022)  5 - p. 100129 , 2022
Link: https://doi.org/10.1016/..
 
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4

Complete genomic and epigenetic maps of human centromeres:

Altemose, Nicolas ; Logsdon, Glennis A. ; Bzikadze, Andrey V....
Science.  376 (2022)  6588 - p. , 2022
Link: https://doi.org/10.1126/..
 
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5

Benchmarking challenging small variants with linked and lon..:

Wagner, Justin ; Olson, Nathan D. ; Harris, Lindsay...
Cell Genomics.  2 (2022)  5 - p. 100128 , 2022
Link: https://doi.org/10.1016/..
 
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6

A complete reference genome improves analysis of human gene..:

Aganezov, Sergey ; Yan, Stephanie M. ; Soto, Daniela C....
Science.  376 (2022)  6588 - p. , 2022
Link: https://doi.org/10.1126/..
 
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7

Merfin: improved variant filtering, assembly evaluation and..:

Formenti, Giulio ; Rhie, Arang ; Walenz, Brian P....
Nature Methods.  19 (2022)  6 - p. 696-704 , 2022
Link: https://doi.org/10.1038/..
 
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8

Accelerated identification of disease-causing variants with..:

Goenka, Sneha D. ; Gorzynski, John E. ; Shafin, Kishwar...
Nature Biotechnology.  40 (2022)  7 - p. 1035-1041 , 2022
Link: https://doi.org/10.1038/..
 
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9

Chasing perfection: validation and polishing strategies for..:

Mc Cartney, Ann M. ; Shafin, Kishwar ; Alonge, Michael...
Nature Methods.  19 (2022)  6 - p. 687-695 , 2022
Link: https://doi.org/10.1038/..
 
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10

Haplotype-aware variant calling with PEPPER-Margin-DeepVari..:

Shafin, Kishwar ; Pesout, Trevor ; Chang, Pi-Chuan...
Nature Methods.  18 (2021)  11 - p. 1322-1332 , 2021
Link: https://doi.org/10.1038/..
 
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11

Nanopore sequencing and the Shasta toolkit enable efficient..:

Shafin, Kishwar ; Pesout, Trevor ; Lorig-Roach, Ryan...
Nature Biotechnology.  38 (2020)  9 - p. 1044-1053 , 2020
Link: https://doi.org/10.1038/..
 
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12

Impact of heuristics in clustering large biological network:

Shafin, Md. Kishwar ; Kabir, Kazi Lutful ; Ridwan, Iffatur...
Computational Biology and Chemistry.  59 (2015)  - p. 28-36 , 2015
Link: https://doi.org/10.1016/..
 
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13

Mongol Barota: A next generation rover:

, In: The 8th International Conference on Software, Knowledge, Information Management and Applications (SKIMA 2014),
Shafin, Md. Kishwar ; Kabir, Kazi Lutful ; Ridwan, Iffatur... - p. 1-8 , 2014
Link: https://doi.org/10.1109/..
 
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14

A draft human pangenome reference:

Liao, Wen-Wei ; Asri, Mobin ; Ebler, Jana...
qt5hn600wf.  , 2023
Link: https://escholarship.org..
 
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15

A draft human pangenome reference:

Liao, Wen-Wei ; Asri, Mobin ; Ebler, Jana...
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10172123/.  , 2023
Link: http://www.ncbi.nlm.nih...
 
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