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Shank, Stephen
115
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Online (115)
Mediatypes
Articles (Online) (49)
Bookchapter (Online) (5)
OpenAccess-fulltext (59)
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1
Fast and accurate genome-wide predictions and structural mo..:
Guerler, Aysam
;
Baker, Dannon
;
van den Beek, Marius
...
BMC Bioinformatics. 24 (2023) 1 - p. , 2023
Link:
https://doi.org/10.1186/..
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2
Natural selection differences detected in key protein domai..:
Zehr, Jordan D
;
Kosakovsky Pond, Sergei L
;
Millet, Jean K
...
Virus Evolution. 9 (2023) 1 - p. , 2023
Link:
https://doi.org/10.1093/..
?
3
Selection Analysis Identifies Clusters of Unusual Mutationa..:
Martin, Darren P.
;
Lytras, Spyros
;
Lucaci, Alexander G.
...
Molecular Biology and Evolution. 39 (2022) 4 - p. , 2022
Link:
https://doi.org/10.1093/..
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4
RASCL: Rapid Assessment of Selection in CLades through mole..:
Lucaci, Alexander G.
;
Zehr, Jordan D.
;
Shank, Stephen D.
...
PLOS ONE. 17 (2022) 11 - p. e0275623 , 2022
Link:
https://doi.org/10.1371/..
?
5
Detection of SARS-CoV-2 intra-host recombination during sup..:
Wertheim, Joel O.
;
Wang, Jade C.
;
Leelawong, Mindy
...
Nature Communications. 13 (2022) 1 - p. , 2022
Link:
https://doi.org/10.1038/..
?
6
Extra base hits: Widespread empirical support for instantan..:
Lucaci, Alexander G.
;
Wisotsky, Sadie R.
;
Shank, Stephen D.
...
PLOS ONE. 16 (2021) 3 - p. e0248337 , 2021
Link:
https://doi.org/10.1371/..
?
7
The emergence and ongoing convergent evolution of the SARS-..:
Martin, Darren P.
;
Weaver, Steven
;
Tegally, Houriiyah
...
Cell. 184 (2021) 20 - p. 5189-5200.e7 , 2021
Link:
https://doi.org/10.1016/..
?
8
Phyloanatomic characterization of the distinct T cell and m..:
The Search007 Study Group
;
Salemi, Marco
;
RattoKim, Silvia
...
Virus Evolution. 6 (2020) 1 - p. , 2020
Link:
https://doi.org/10.1093/..
?
9
Characterizing lineage-specific evolution and the processes..:
Northover, David E.
;
Shank, Stephen D.
;
Liberles, David A.
BMC Evolutionary Biology. 20 (2020) 1 - p. , 2020
Link:
https://doi.org/10.1186/..
?
10
Synonymous Site-to-Site Substitution Rate Variation Dramati..:
Wisotsky, Sadie R
;
Kosakovsky Pond, Sergei L
;
Shank, Stephen D
..
Molecular Biology and Evolution. 37 (2020) 8 - p. 2430-2439 , 2020
Link:
https://doi.org/10.1093/..
?
11
HyPhy 2.5—A Customizable Platform for Evolutionary Hypothes..:
Kosakovsky Pond, Sergei L
;
Poon, Art F Y
;
Velazquez, Ryan
...
Molecular Biology and Evolution. 37 (2019) 1 - p. 295-299 , 2019
Link:
https://doi.org/10.1093/..
?
12
Evolution of Viral Genomes: Interplay Between Selection, Re..:
, In:
Methods in Molecular Biology; Evolutionary Genomics
,
Spielman, Stephanie J.
;
Weaver, Steven
;
Shank, Stephen D.
... - p. 427-468 , 2019
Link:
https://doi.org/10.1007/..
?
13
Datamonkey 2.0: A Modern Web Application for Characterizing..:
Weaver, Steven
;
Shank, Stephen D
;
Spielman, Stephanie J
...
Molecular Biology and Evolution. 35 (2018) 3 - p. 773-777 , 2018
Link:
https://doi.org/10.1093/..
?
14
phylotree.js - a JavaScript library for application develop..:
Shank, Stephen D.
;
Weaver, Steven
;
Kosakovsky Pond, Sergei L.
BMC Bioinformatics. 19 (2018) 1 - p. , 2018
Link:
https://doi.org/10.1186/..
?
15
The Adaptive Evolution Database (TAED): A New Release of a ..:
Hermansen, Russell A.
;
Oswald, Benjamin P.
;
Knight, Stormy
...
Journal of Molecular Evolution. 85 (2017) 1-2 - p. 46-56 , 2017
Link:
https://doi.org/10.1007/..
1-15