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Sharir‐Ivry, Avital
43  results:
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1

Valence Bond and Enzyme Catalysis: A Time To Break Down and..:

Sharir‐Ivry, Avital ; Varatharaj, Rajapandian ; Shurki, Avital
Chemistry – A European Journal.  21 (2015)  19 - p. 7159-7169 , 2015
Link: https://doi.org/10.1002/..
 
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2

Valence Bond‐Based Hybrid Quantum Mechanics Molecular Mecha..:

Shurki, Avital ; Sharir‐Ivry, Avital
Israel Journal of Chemistry.  54 (2014)  8-9 - p. 1189-1204 , 2014
Link: https://doi.org/10.1002/..
 
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3

Quantifying evolutionary importance of protein sites: A Tal..:

Sharir-Ivry, Avital ; Xia, Yu ; Zhang, Jianzhi
PLOS Genetics.  17 (2021)  4 - p. e1009476 , 2021
Link: https://doi.org/10.1371/..
 
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4

Using Pseudoenzymes to Probe Evolutionary Design Principles..:

Sharir-Ivry, Avital ; Xia, Yu
Evolutionary Bioinformatics.  15 (2019)  - p. 117693431985593 , 2019
Link: https://doi.org/10.1177/..
 
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5

Non-catalytic Binding Sites Induce Weaker Long-Range Evolut..:

Sharir-Ivry, Avital ; Xia, Yu
Journal of Molecular Biology.  431 (2019)  19 - p. 3860-3870 , 2019
Link: https://doi.org/10.1016/..
 
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6

Nature of Long-Range Evolutionary Constraint in Enzymes: In..:

Sharir-Ivry, Avital ; Xia, Yu ; Wilke, Claus
Molecular Biology and Evolution.  35 (2018)  11 - p. 2597-2606 , 2018
Link: https://doi.org/10.1093/..
 
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7

The Impact of Native State Switching on Protein Sequence Ev..:

Sharir-Ivry, Avital ; Xia, Yu
Molecular Biology and Evolution.  34 (2017)  6 - p. 1378-1390 , 2017
Link: https://doi.org/10.1093/..
 
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8

Challenges within the Linear Response Approximation When St..:

Sharir-Ivry, Avital ; Varatharaj, Rajapandian ; Shurki, Avital
Journal of Chemical Theory and Computation.  11 (2014)  1 - p. 293-302 , 2014
Link: https://doi.org/10.1021/..
 
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9

VB/MM Protein Landscapes: A Study of the SN2 Reaction in Ha..:

Sharir-Ivry, Avital ; Shnerb, Tamar ; Štrajbl, Marek.
The Journal of Physical Chemistry B.  114 (2010)  6 - p. 2212-2218 , 2010
Link: https://doi.org/10.1021/..
 
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10

Density Embedded VB/MM:  A Hybrid ab Initio VB/MM with Elec..:

Sharir-Ivry, Avital ; Crown, Hadar A. ; Wu, Wei.
The Journal of Physical Chemistry A.  112 (2008)  11 - p. 2489-2496 , 2008
Link: https://doi.org/10.1021/..
 
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11

A VB/MM View of the Identity SN2 Valence-Bond State Correla..:

Sharir-Ivry, Avital ; Shurki, Avital
The Journal of Physical Chemistry A.  112 (2008)  50 - p. 13157-13163 , 2008
Link: https://doi.org/10.1021/..
 
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12

VB/MM—The Validity of the Underlying Approximations:

Sharir-Ivry, Avital ; Shurki, Avital
The Journal of Physical Chemistry B.  112 (2008)  39 - p. 12491-12497 , 2008
Link: https://doi.org/10.1021/..
 
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13

Quantifying evolutionary importance of protein sites: A Tal..:

Avital Sharir-Ivry ; Yu Xia
https://doi.org/10.1371/journal.pgen.1009476.  , 2021
Link: https://doi.org/10.1371/..
 
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14

Using Pseudoenzymes to Probe Evolutionary Design Principles..:

Avital Sharir-Ivry ; Yu Xia
https://doi.org/10.1177/1176934319855937.  , 2019
Link: https://doi.org/10.1177/..
 
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15

Average conservation gradient after reduction of the relati..:

Avital Sharir-Ivry (1691308) ; Yu Xia (8822)
https://figshare.com/articles/figure/Average_conservation_gradient_after_reduction_of_the_relative_contribution_of_proximity_to_the_protein_center_as_a_function_of_average_evolutionary_rate_dN_dS_for_all_yeast_protein_residues_binned_according_to_their_annotated_conservation_r/14382420.  , 2021
Link: https://doi.org/10.1371/..
 
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