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Simpkin, Adam J.
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1

Cover Image, Volume 91, Issue 12:

Das, Rhiju ; Kretsch, Rachael C. ; Simpkin, Adam J....
Proteins: Structure, Function, and Bioinformatics.  91 (2023)  12 - p. , 2023
Link: https://doi.org/10.1002/..
 
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2

Assessment of three‐dimensional RNA structure prediction in..:

Das, Rhiju ; Kretsch, Rachael C. ; Simpkin, Adam J....
Proteins: Structure, Function, and Bioinformatics.  91 (2023)  12 - p. 1747-1770 , 2023
Link: https://doi.org/10.1002/..
 
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3

Tertiary structure assessment at CASP15:

Simpkin, Adam J. ; Mesdaghi, Shahram ; Sánchez Rodríguez, Filomeno...
Proteins: Structure, Function, and Bioinformatics.  91 (2023)  12 - p. 1616-1635 , 2023
Link: https://doi.org/10.1002/..
 
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4

Structural insights into pink-eyed dilution protein (Oca2):

Mesdaghi, Shahram ; Murphy, David L. ; Simpkin, Adam J..
Bioscience Reports.  43 (2023)  7 - p. , 2023
Link: https://doi.org/10.1042/..
 
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5

Pathogenomic analyses of Shigella isolates inform factors l..:

Bengtsson, Rebecca J. ; Simpkin, Adam J. ; Pulford, Caisey V....
Nature Microbiology.  7 (2022)  2 - p. 251-261 , 2022
Link: https://doi.org/10.1038/..
 
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6

Exploiting new generation ab initio and homology models fro..:

Simpkin, Adam J. ; Thomas, Jens M. H. ; Keegan, Ronan M..
Acta Crystallographica Section A Foundations and Advances.  77 (2021)  a2 - p. C688-C688 , 2021
Link: https://doi.org/10.1107/..
 
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7

findMySequence: a neural-network-based approach for identif..:

Chojnowski, Grzegorz ; Simpkin, Adam J. ; Leonardo, Diego A....
IUCrJ.  9 (2021)  1 - p. 86-97 , 2021
Link: https://doi.org/10.1107/..
 
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8

ConPlot: web-based application for the visualization of pro..:

Sánchez Rodríguez, Filomeno ; Mesdaghi, Shahram ; Simpkin, Adam J....
Bioinformatics.  37 (2021)  17 - p. 2763-2765 , 2021
Link: https://doi.org/10.1093/..
 
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9

Assessing the utility of CASP14 models for molecular replac..:

Millán, Claudia ; Keegan, Ronan M. ; Pereira, Joana...
Proteins: Structure, Function, and Bioinformatics.  89 (2021)  12 - p. 1752-1769 , 2021
Link: https://doi.org/10.1002/..
 
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10

Evaluation of model refinement in CASP14:

Simpkin, Adam J. ; Sánchez Rodríguez, Filomeno ; Mesdaghi, Shahram..
Proteins: Structure, Function, and Bioinformatics.  89 (2021)  12 - p. 1852-1869 , 2021
Link: https://doi.org/10.1002/..
 
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11

Redeployment of automated MrBUMP search-model identificatio..:

Simpkin, Adam J. ; Winn, Martyn D. ; Rigden, Daniel J..
Acta Crystallographica Section D Structural Biology.  77 (2021)  11 - p. 1378-1385 , 2021
Link: https://doi.org/10.1107/..
 
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12

High‐accuracy protein structure prediction in CASP14:

Pereira, Joana ; Simpkin, Adam J. ; Hartmann, Marcus D....
Proteins: Structure, Function, and Bioinformatics.  89 (2021)  12 - p. 1687-1699 , 2021
Link: https://doi.org/10.1002/..
 
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13

Using Phaser and ensembles to improve the performance of SI..:

Simpkin, Adam J. ; Simkovic, Felix ; Thomas, Jens M. H....
Acta Crystallographica Section D Structural Biology.  76 (2020)  1 - p. 1-8 , 2020
Link: https://doi.org/10.1107/..
 
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14

Helical ensembles outperform ideal helices in molecular rep..:

Sánchez Rodríguez, Filomeno ; Simpkin, Adam J. ; Davies, Owen R...
Acta Crystallographica Section D Structural Biology.  76 (2020)  10 - p. 962-970 , 2020
Link: https://doi.org/10.1107/..
 
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15

Molecular replacement using structure predictions from data..:

Simpkin, Adam J. ; Thomas, Jens M. H. ; Simkovic, Felix..
Acta Crystallographica Section D Structural Biology.  75 (2019)  12 - p. 1051-1062 , 2019
Link: https://doi.org/10.1107/..
 
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