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Sindhikara, Daniel
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1

Reliable and Accurate Solution to the Induced Fit Docking P..:

Miller, Edward B. ; Murphy, Robert B. ; Sindhikara, Daniel...
Journal of Chemical Theory and Computation.  17 (2021)  4 - p. 2630-2639 , 2021
Link: https://doi.org/10.1021/..
 
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2

Simple Predictive Models of Passive Membrane Permeability I..:

Leung, Siegfried S. F. ; Sindhikara, Daniel ; Jacobson, Matthew P.
Journal of Chemical Information and Modeling.  56 (2016)  5 - p. 924-929 , 2016
Link: https://doi.org/10.1021/..
 
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3

Determination of the Formylglycinamide Ribonucleotide Amido..:

Tanwar, Ajay S. ; Sindhikara, Daniel J. ; Hirata, Fumio.
ACS Chemical Biology.  10 (2015)  3 - p. 698-704 , 2015
Link: https://doi.org/10.1021/..
 
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4

A 3D‐RISM/RISM study of the oseltamivir binding efficiency ..:

Phanich, Jiraphorn ; Rungrotmongkol, Thanyada ; Sindhikara, Daniel...
Protein Science.  25 (2015)  1 - p. 147-158 , 2015
Link: https://doi.org/10.1002/..
 
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5

Towards an Understanding of Channelrhodopsin Function: Simu..:

Watanabe, Hiroshi C. ; Welke, Kai ; Sindhikara, Daniel J...
Journal of Molecular Biology.  425 (2013)  10 - p. 1795-1814 , 2013
Link: https://doi.org/10.1016/..
 
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6

Analysis of Biomolecular Solvation Sites by 3D-RISM Theory:

Sindhikara, Daniel J. ; Hirata, Fumio
The Journal of Physical Chemistry B.  117 (2013)  22 - p. 6718-6723 , 2013
Link: https://doi.org/10.1021/..
 
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7

Placevent: An algorithm for prediction of explicit solvent ..:

Sindhikara, Daniel J. ; Yoshida, Norio ; Hirata, Fumio
Journal of Computational Chemistry.  33 (2012)  18 - p. 1536-1543 , 2012
Link: https://doi.org/10.1002/..
 
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8

Modular reweighting software for statistical mechanical ana..:

Sindhikara, Daniel J.
Computer Physics Communications.  183 (2012)  7 - p. 1560-1561 , 2012
Link: https://doi.org/10.1016/..
 
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9

Modular reweighting software for statistical mechanical ana..:

Sindhikara, Daniel J.
Computer Physics Communications.  182 (2011)  10 - p. 2227-2231 , 2011
Link: https://doi.org/10.1016/..
 
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10

Solvent penetration in photoactive yellow protein R52Q muta..:

Sindhikara, Daniel J. ; Yoshida, Norio ; Kataoka, Mikio.
Journal of Molecular Liquids.  164 (2011)  1-2 - p. 120-122 , 2011
Link: https://doi.org/10.1016/..
 
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11

Exchange Often and Properly in Replica Exchange Molecular D..:

Sindhikara, Daniel J. ; Emerson, Daniel J. ; Roitberg, Adrian E.
Journal of Chemical Theory and Computation.  6 (2010)  9 - p. 2804-2808 , 2010
Link: https://doi.org/10.1021/..
 
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12

Apo and Nickel-Bound Forms of the Pyrococcus horikoshii Spe..:

Sindhikara, Daniel J. ; Roitberg, Adrian E. ; Merz Jr., Kenneth M.
Biochemistry.  48 (2009)  50 - p. 12024-12033 , 2009
Link: https://doi.org/10.1021/..
 
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13

Bad Seeds Sprout Perilous Dynamics: Stochastic Thermostat I..:

Sindhikara, Daniel J. ; Kim, Seonah ; Voter, Arthur F..
Journal of Chemical Theory and Computation.  5 (2009)  6 - p. 1624-1631 , 2009
Link: https://doi.org/10.1021/..
 
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14

Exchange frequency in replica exchange molecular dynamics:

Sindhikara, Daniel ; Meng, Yilin ; Roitberg, Adrian E.
The Journal of Chemical Physics.  128 (2008)  2 - p. , 2008
Link: https://doi.org/10.1063/..
 
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15

Cavity as a Source of Conformational Fluctuation and High-E..:

Maeno, Akihiro ; Sindhikara, Daniel ; Hirata, Fumio...
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4286597/.  , 2015
Link: http://www.ncbi.nlm.nih...
 
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