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Sulkowska, Joanna I
214  results:
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1

Are there double knots in proteins? Prediction and in vitro..:

Perlinska, Agata P. ; Nguyen, Mai Lan ; Pilla, Smita P....
Frontiers in Molecular Biosciences.  10 (2024)  - p. , 2024
Link: https://doi.org/10.3389/..
 
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2

Knots and θ-Curves Identification in Polymeric Chains and N..:

Bruno da Silva, Fernando ; Gabrovšek, Boštjan ; Korpacz, Marta...
Macromolecules.  57 (2024)  9 - p. 4599-4608 , 2024
Link: https://doi.org/10.1021/..
 
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3

Knotted artifacts in predicted 3D RNA structures:

Gren, Bartosz A. ; Antczak, Maciej ; Zok, Tomasz...
PLOS Computational Biology.  20 (2024)  6 - p. e1011959 , 2024
Link: https://doi.org/10.1371/..
 
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4

Discovery of a trefoil knot in the RydC RNA: Challenging pr..:

Niemyska, Wanda ; Mukherjee, Sunandan ; Gren, Bartosz A....
Journal of Molecular Biology.  436 (2024)  6 - p. 168455 , 2024
Link: https://doi.org/10.1016/..
 
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5

AlphaKnot 2.0: a web server for the visualization of protei..:

Rubach, Pawel ; Sikora, Maciej ; Jarmolinska, Aleksandra I..
Nucleic Acids Research.  52 (2024)  W1 - p. W187-W193 , 2024
Link: https://doi.org/10.1093/..
 
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6

Knot or not? Identifying unknotted proteins in knotted fami..:

Sikora, Maciej ; Klimentova, Eva ; Uchal, Dawid...
Protein Science.  33 (2024)  7 - p. , 2024
Link: https://doi.org/10.1002/..
 
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7

Conservation of knotted and slipknotted topology in transme..:

Zayats, Vasilina ; Sikora, Maciej ; Perlinska, Agata P....
Biophysical Journal.  122 (2023)  23 - p. 4528-4541 , 2023
Link: https://doi.org/10.1016/..
 
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8

AlphaFold predicts novel human proteins with knots:

Perlinska, Agata P. ; Niemyska, Wanda H. ; Gren, Bartosz A....
Protein Science.  32 (2023)  5 - p. , 2023
Link: https://doi.org/10.1002/..
 
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9

Nucleolar Essential Protein 1 (Nep1): Elucidation of enzyma..:

Jedrzejewski, Mateusz ; Belza, Barbara ; Lewandowska, Iwona...
Computational and Structural Biotechnology Journal.  21 (2023)  - p. 3999-4008 , 2023
Link: https://doi.org/10.1016/..
 
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10

Identification of Novel CB2 Ligands through Virtual Screeni..:

Stasiulewicz, Adam ; Lesniak, Anna ; Bujalska-Zadrożny, Magdalena..
Journal of Chemical Information and Modeling.  63 (2023)  3 - p. 1012-1027 , 2023
Link: https://doi.org/10.1021/..
 
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11

Amino acid variants of SARS-CoV-2 papain-like protease have..:

Perlinska, Agata P. ; Stasiulewicz, Adam ; Nguyen, Mai Lan...
PLOS Computational Biology.  18 (2022)  11 - p. e1010667 , 2022
Link: https://doi.org/10.1371/..
 
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12

Identification of CB1 Ligands among Drugs, Phytochemicals a..:

Stasiulewicz, Adam ; Lesniak, Anna ; Setny, Piotr..
ACS Chemical Neuroscience.  13 (2022)  20 - p. 2991-3007 , 2022
Link: https://doi.org/10.1021/..
 
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13

AlphaKnot: server to analyze entanglement in structures pre..:

Niemyska, Wanda ; Rubach, Pawel ; Gren, Bartosz A...
Nucleic Acids Research.  50 (2022)  W1 - p. W44-W50 , 2022
Link: https://doi.org/10.1093/..
 
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14

SARS-CoV-2 Papain-Like Protease Potential Inhibitors—In Sil..:

Stasiulewicz, Adam ; Maksymiuk, Alicja W. ; Nguyen, Mai Lan..
International Journal of Molecular Sciences.  22 (2021)  8 - p. 3957 , 2021
Link: https://doi.org/10.3390/..
 
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15

Slipknotted and unknotted monovalent cation-proton antiport..:

Zayats, Vasilina ; Perlinska, Agata P. ; Jarmolinska, Aleksandra I....
PLOS Computational Biology.  17 (2021)  10 - p. e1009502 , 2021
Link: https://doi.org/10.1371/..
 
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