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Team, the Galaxy
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1

Using Galaxy to Perform Large‐Scale Interactive Data Analys..:

Ostrovsky, Alexander ; Hillman‐Jackson, Jennifer ; Bouvier, Dave...
Current Protocols.  1 (2021)  2 - p. , 2021
Link: https://doi.org/10.1002/..
 
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2

Biology Needs Evolutionary Software Tools: Let's Build Them..:

Nekrutenko, Anton ; Team, Galaxy ; Goecks, Jeremy...
Molecular Biology and Evolution.  35 (2018)  6 - p. 1372-1375 , 2018
Link: https://doi.org/10.1093/..
 
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3

NGS analyses by visualization with Trackster:

Goecks, Jeremy ; Coraor, Nate ; Team, The Galaxy..
Nature Biotechnology.  30 (2012)  11 - p. 1036-1039 , 2012
Link: https://doi.org/10.1038/..
 
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4

Using Galaxy to Perform Large‐Scale Interactive Data Analys..:

Hillman‐Jackson, Jennifer ; Clements, Dave ; Blankenberg, Daniel...
Current Protocols in Bioinformatics.  38 (2012)  1 - p. , 2012
Link: https://doi.org/10.1002/..
 
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5

A reference model for deploying applications in virtualized..:

Afgan, Enis ; Baker, Dannon ; Team, the Galaxy..
Concurrency and Computation: Practice and Experience.  24 (2011)  12 - p. 1349-1361 , 2011
Link: https://doi.org/10.1002/..
 
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6

Reproducible and accessible analysis of transposon insertio..:

Larivière, Delphine ; Wickham, Laura ; Keiler, Kenneth..
BMC Microbiology.  21 (2021)  1 - p. , 2021
Link: https://doi.org/10.1186/..
 
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7

A guide and best practices for R/Bioconductor tool integrat..:

Turaga, Nitesh ; Freeberg, Mallory A. ; Baker, Dannon...
F1000Research.  5 (2016)  - p. 2757 , 2016
Link: https://doi.org/10.12688..
 
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8

Enabling cloud bursting for life sciences within Galaxy:

Afgan, Enis ; Coraor, Nate ; Chilton, John...
Concurrency and Computation: Practice and Experience.  27 (2015)  16 - p. 4330-4343 , 2015
Link: https://doi.org/10.1002/..
 
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9

Galaxy cluster to cloud - genomics at scale:

, In: Proceedings of the 9th Gateway Computing Environments Workshop,
Afgan, Enis ; Baker, Dannon ; Chilton, John... - p. 47-50 , 2014
Link: https://dl.acm.org/doi/1..
 
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10

Wrangling Galaxy's reference data:

Blankenberg, Daniel ; Johnson, James E. ; Taylor, James..
Bioinformatics.  30 (2014)  13 - p. 1917-1919 , 2014
Link: https://doi.org/10.1093/..
 
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11

Web-based visual analysis for high-throughput genomics:

Goecks, Jeremy ; Eberhard, Carl ; Too, Tomithy...
BMC Genomics.  14 (2013)  1 - p. , 2013
Link: https://doi.org/10.1186/..
 
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12

Creating reusable tools from scripts: the Galaxy Tool Facto..:

Lazarus, Ross ; Kaspi, Antony ; Ziemann, Mark.
Bioinformatics.  28 (2012)  23 - p. 3139-3140 , 2012
Link: https://doi.org/10.1093/..
 
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13

Making whole genome multiple alignments usable for biologis..:

Blankenberg, Daniel ; Taylor, James ; Nekrutenko, Anton.
Bioinformatics.  27 (2011)  17 - p. 2426-2428 , 2011
Link: https://doi.org/10.1093/..
 
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14

Manipulation of FASTQ data with Galaxy:

Blankenberg, Daniel ; Gordon, Assaf ; Von Kuster, Gregory...
Bioinformatics.  26 (2010)  14 - p. 1783-1785 , 2010
Link: https://doi.org/10.1093/..
 
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15

Windshield splatter analysis with the Galaxy metagenomic pi..:

Kosakovsky Pond, Sergei ; Wadhawan, Samir ; Chiaromonte, Francesca...
Genome Research.  19 (2009)  11 - p. 2144-2153 , 2009
Link: https://doi.org/10.1101/..
 
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