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Thiruppathy, Deepan
31  results:
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1

Genome-scale metabolic modeling of the human gut bacterium ..:

Neal, Maxwell ; Thiruppathy, Deepan ; Zengler, Karsten.
PLOS Computational Biology.  19 (2023)  10 - p. e1011594 , 2023
Link: https://doi.org/10.1371/..
 
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2

The genome-scale metabolic model for the purple non-sulfur ..:

Tec-Campos, Diego ; Posadas, Camila ; Tibocha-Bonilla, Juan D....
PLOS Computational Biology.  19 (2023)  8 - p. e1011371 , 2023
Link: https://doi.org/10.1371/..
 
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3

A Reproducible and Tunable Synthetic Soil Microbial Communi..:

Coker, Joanna ; Zhalnina, Kateryna ; Marotz, Clarisse...
mSystems.  7 (2022)  6 - p. , 2022
Link: https://doi.org/10.1128/..
 
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The genome-scale metabolic model for the purple non-sulfur ..:

Tec-Campos, Diego ; Posadas, Camila ; Tibocha-Bonilla, Juan...
qt1k49131k.  , 2023
Link: https://escholarship.org..
 
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5

A Reproducible and Tunable Synthetic Soil Microbial Communi..:

Coker, Joanna ; Zhalnina, Kateryna ; Marotz, Clarisse...
qt4vj876fp.  , 2022
Link: https://escholarship.org..
 
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6

A Reproducible and Tunable Synthetic Soil Microbial Communi..:

Coker, Joanna ; Zhalnina, Kateryna ; Marotz, Clarisse...
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9765266/.  , 2022
Link: http://www.ncbi.nlm.nih...
 
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7

i MN674 in Spreadsheet Format:

Maxwell Neal ; Deepan Thiruppathy ; Karsten Zengler
doi:10.1371/journal.pcbi.1011594.s009.  , 2023
Link: https://doi.org/10.1371/..
 
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8

A flowchart outlining the general methodology from initial ..:

Maxwell Neal ; Deepan Thiruppathy ; Karsten Zengler
doi:10.1371/journal.pcbi.1011594.g006.  , 2023
Link: https://doi.org/10.1371/..
 
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9

The biomass components consumed in the model:

Maxwell Neal ; Deepan Thiruppathy ; Karsten Zengler
doi:10.1371/journal.pcbi.1011594.g002.  , 2023
Link: https://doi.org/10.1371/..
 
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10

Differentially Essential Genes:

Maxwell Neal ; Deepan Thiruppathy ; Karsten Zengler
doi:10.1371/journal.pcbi.1011594.t003.  , 2023
Link: https://doi.org/10.1371/..
 
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11

Media Conditions from Literature:

Maxwell Neal ; Deepan Thiruppathy ; Karsten Zengler
doi:10.1371/journal.pcbi.1011594.s007.  , 2023
Link: https://doi.org/10.1371/..
 
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12

Figure Code:

Maxwell Neal ; Deepan Thiruppathy ; Karsten Zengler
doi:10.1371/journal.pcbi.1011594.s012.  , 2023
Link: https://doi.org/10.1371/..
 
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13

In Silico Media Conditions:

Maxwell Neal ; Deepan Thiruppathy ; Karsten Zengler
doi:10.1371/journal.pcbi.1011594.s004.  , 2023
Link: https://doi.org/10.1371/..
 
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14

Purine biosynthesis is saved from gene knockouts by externa..:

Maxwell Neal ; Deepan Thiruppathy ; Karsten Zengler
doi:10.1371/journal.pcbi.1011594.g005.  , 2023
Link: https://doi.org/10.1371/..
 
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15

MEMOTE Report:

Maxwell Neal ; Deepan Thiruppathy ; Karsten Zengler
doi:10.1371/journal.pcbi.1011594.s010.  , 2023
Link: https://doi.org/10.1371/..
 
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