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Tyzack, Jonathan D.
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1

EzMechanism: an automated tool to propose catalytic mechani..:

Ribeiro, Antonio J. M. ; Riziotis, Ioannis G. ; Tyzack, Jonathan D...
Nature Methods.  20 (2023)  10 - p. 1516-1522 , 2023
Link: https://doi.org/10.1038/..
 
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2

Using mechanism similarity to understand enzyme evolution:

Ribeiro, António J. M. ; Riziotis, Ioannis G. ; Tyzack, Jonathan D...
Biophysical Reviews.  14 (2022)  6 - p. 1273-1280 , 2022
Link: https://doi.org/10.1007/..
 
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3

GRaSP-web: a machine learning strategy to predict binding s..:

Santana, Charles A ; Izidoro, Sandro C ; de Melo-Minardi, Raquel C...
Nucleic Acids Research.  50 (2022)  W1 - p. W392-W397 , 2022
Link: https://doi.org/10.1093/..
 
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4

Structure-Guided Engineering of a Family IV Cold-Adapted Es..:

Noby, Nehad ; Johnson, Rachel L. ; Tyzack, Jonathan D....
International Journal of Molecular Sciences.  23 (2022)  9 - p. 4703 , 2022
Link: https://doi.org/10.3390/..
 
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5

The Enzyme Portal: an integrative tool for enzyme informati..:

Zaru, Rossana ; Onwubiko, Joseph ; Ribeiro, Antonio J. M....
The FEBS Journal.  289 (2021)  19 - p. 5875-5890 , 2021
Link: https://doi.org/10.1111/..
 
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6

A global analysis of function and conservation of catalytic..:

Ribeiro, António J.M. ; Tyzack, Jonathan D. ; Borkakoti, Neera..
Journal of Biological Chemistry.  295 (2020)  2 - p. 314-324 , 2020
Link: https://doi.org/10.1074/..
 
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7

Finding enzyme cofactors in Protein Data Bank:

Mukhopadhyay, Abhik ; Borkakoti, Neera ; Pravda, Lukáš...
Bioinformatics.  35 (2019)  18 - p. 3510-3511 , 2019
Link: https://doi.org/10.1093/..
 
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8

Computational methods and tools to predict cytochrome P450 ..:

Tyzack, Jonathan D. ; Kirchmair, Johannes
Chemical Biology & Drug Design.  93 (2019)  4 - p. 377-386 , 2019
Link: https://doi.org/10.1111/..
 
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9

Exploring Chemical Biosynthetic Design Space with Transform..:

Tyzack, Jonathan D. ; Ribeiro, Antonio J. M. ; Borkakoti, Neera.
ACS Synthetic Biology.  8 (2019)  11 - p. 2494-2506 , 2019
Link: https://doi.org/10.1021/..
 
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10

Identifying pseudoenzymes using functional annotation: pitf..:

Ribeiro, Antonio J. M. ; Tyzack, Jonathan D. ; Borkakoti, Neera.
The FEBS Journal.  287 (2019)  19 - p. 4128-4140 , 2019
Link: https://doi.org/10.1111/..
 
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11

Ranking Enzyme Structures in the PDB by Bound Ligand Simila..:

Tyzack, Jonathan D. ; Fernando, Laurent ; Ribeiro, Antonio J.M...
Structure.  26 (2018)  4 - p. 565-571.e3 , 2018
Link: https://doi.org/10.1016/..
 
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12

Can the inhibition of cytochrome P450 in aquatic invertebra..:

Gottardi, Michele ; Tyzack, Jonathan D. ; Bender, Andreas.
Aquatic Toxicology.  201 (2018)  - p. 11-20 , 2018
Link: https://doi.org/10.1016/..
 
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13

WhichP450: a multi-class categorical model to predict the m..:

Hunt, Peter A. ; Segall, Matthew D. ; Tyzack, Jonathan D.
Journal of Computer-Aided Molecular Design.  32 (2018)  4 - p. 537-546 , 2018
Link: https://doi.org/10.1007/..
 
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14

Transform-MinER: transforming molecules in enzyme reactions:

Tyzack, Jonathan D ; Ribeiro, Antonio J M ; Borkakoti, Neera..
Bioinformatics.  34 (2018)  20 - p. 3597-3599 , 2018
Link: https://doi.org/10.1093/..
 
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15

Understanding enzyme function evolution from a computationa..:

Tyzack, Jonathan D ; Furnham, Nicholas ; Sillitoe, Ian..
Current Opinion in Structural Biology.  47 (2017)  - p. 131-139 , 2017
Link: https://doi.org/10.1016/..
 
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