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Uyeda, Josef
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1

ontophylo: Reconstructing the evolutionary dynamics of phen..:

Porto, Diego S. ; Uyeda, Josef ; Mikó, István.
Methods in Ecology and Evolution.  15 (2024)  2 - p. 290-300 , 2024
Link: https://doi.org/10.1111/..
 
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2

rphenoscate: An R package for semantics‐aware evolutionary ..:

Porto, Diego S. ; Tarasov, Sergei ; Charpentier, Caleb...
Methods in Ecology and Evolution.  14 (2023)  10 - p. 2531-2540 , 2023
Link: https://doi.org/10.1111/..
 
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3

Conceptual and empirical bridges between micro- and macroev..:

Rolland, Jonathan ; Henao-Diaz, L. Francisco ; Doebeli, Michael...
Nature Ecology & Evolution.  7 (2023)  8 - p. 1181-1193 , 2023
Link: https://doi.org/10.1038/..
 
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4

Robust Phylogenetic Regression:

Adams, Richard ; Cain, Zoe ; Assis, Raquel..
Systematic Biology.  73 (2023)  1 - p. 140-157 , 2023
Link: https://doi.org/10.1093/..
 
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5

Cross-disciplinary information for understanding macroevolu..:

Liow, Lee Hsiang ; Uyeda, Josef ; Hunt, Gene
Trends in Ecology & Evolution.  38 (2023)  3 - p. 250-260 , 2023
Link: https://doi.org/10.1016/..
 
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6

A Cautionary Note on "A Cautionary Note on the Use of Ornst..:

Grabowski, Mark ; Pienaar, Jason ; Voje, Kjetil L...
Systematic Biology.  72 (2023)  4 - p. 955-963 , 2023
Link: https://doi.org/10.1093/..
 
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7

The ClaDS rate-heterogeneous birth–death prior for full phy..:

Barido-Sottani, Joëlle ; Morlon, Hélène ; Uyeda, Josef
Systematic Biology.  72 (2023)  5 - p. 1180-1187 , 2023
Link: https://doi.org/10.1093/..
 
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8

Assessing Bayesian Phylogenetic Information Content of Morp..:

Porto, Diego S ; Dahdul, Wasila M ; Lapp, Hilmar...
Systematic Biology.  71 (2022)  6 - p. 1290-1306 , 2022
Link: https://doi.org/10.1093/..
 
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9

Between a Rock and a Hard Polytomy: Phylogenomics of the Ro..:

Scherz, Mark D ; Masonick, Paul ; Meyer, Axel..
Systematic Biology.  71 (2022)  3 - p. 741-757 , 2022
Link: https://doi.org/10.1093/..
 
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10

Assessment of Absolute Substitution Model Fit Accommodating..:

Goremykin, Vadim ; Uyeda, Josef
Systematic Biology.  72 (2022)  3 - p. 544-558 , 2022
Link: https://doi.org/10.1093/..
 
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11

Fast Likelihood Calculations for Automatic Identification o..:

Grundler, Michael C ; Rabosky, Daniel L ; Zapata, Felipe.
Systematic Biology.  71 (2022)  6 - p. 1307-1318 , 2022
Link: https://doi.org/10.1093/..
 
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12

Six-State Amino Acid Recoding is not an Effective Strategy ..:

Hernandez, Alexandra M ; Ryan, Joseph F ; Uyeda, Josef
Systematic Biology.  70 (2021)  6 - p. 1200-1212 , 2021
Link: https://doi.org/10.1093/..
 
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13

treedata.table: a wrapper for data.table that enables fast ..:

Román Palacios, Cristian ; Wright, April ; Uyeda, Josef
PeerJ.  9 (2021)  - p. e12450 , 2021
Link: https://doi.org/10.7717/..
 
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14

Divergent Processes Drive Parallel Evolution in Marine and ..:

Friedman, S T ; Collyer, M L ; Price, S A..
Systematic Biology.  71 (2021)  6 - p. 1319-1330 , 2021
Link: https://doi.org/10.1093/..
 
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15

Novel Tests of the Key Innovation Hypothesis: Adhesive Toep..:

Miller, Aryeh H ; Stroud, James T ; Uyeda, Josef
Systematic Biology.  71 (2021)  1 - p. 139-152 , 2021
Link: https://doi.org/10.1093/..
 
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