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Vavra, Ondrej
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1

pyCaverDock: Python implementation of the popular tool for ..:

Vavra, Ondrej ; Beranek, Jakub ; Stourac, Jan...
Bioinformatics.  39 (2023)  8 - p. , 2023
Link: https://doi.org/10.1093/..
 
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2

ChannelsDB 2.0: a comprehensive database of protein tunnels..:

Špačková, Anna ; Vávra, Ondřej ; Raček, Tomáš...
Nucleic Acids Research.  52 (2023)  D1 - p. D413-D418 , 2023
Link: https://doi.org/10.1093/..
 
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3

Fast approximative methods for study of ligand transport an..:

Vavra, Ondrej ; Damborsky, Jiri ; Bednar, David
Biotechnology Advances.  60 (2022)  - p. 108009 , 2022
Link: https://doi.org/10.1016/..
 
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4

Screening of world approved drugs against highly dynamical ..:

Pinto, Gaspar P. ; Vavra, Ondrej ; Marques, Sergio M....
Computational and Structural Biotechnology Journal.  19 (2021)  - p. 3187-3197 , 2021
Link: https://doi.org/10.1016/..
 
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5

CaverDock: A Novel Method for the Fast Analysis of Ligand T..:

Filipovic, Jiri ; Vavra, Ondrej ; Plhak, Jan...
IEEE/ACM Transactions on Computational Biology and Bioinformatics.  17 (2020)  5 - p. 1625-1638 , 2020
Link: https://doi.org/10.1109/..
 
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6

DockVis: Visual Analysis of Molecular Docking Trajectories:

Furmanová, Katarína ; Vávra, Ondřej ; Kozlíková, Barbora...
Computer Graphics Forum.  39 (2020)  6 - p. 452-464 , 2020
Link: https://doi.org/10.1111/..
 
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7

Fast Screening of Inhibitor Binding/Unbinding Using Novel S..:

Pinto, Gaspar P. ; Vavra, Ondrej ; Filipovic, Jiri...
Frontiers in Chemistry.  7 (2019)  - p. , 2019
Link: https://doi.org/10.3389/..
 
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8

Caver Web 1.0: identification of tunnels and channels in pr..:

Stourac, Jan ; Vavra, Ondrej ; Kokkonen, Piia...
Nucleic Acids Research.  47 (2019)  W1 - p. W414-W422 , 2019
Link: https://doi.org/10.1093/..
 
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9

Polarity-tunable spin transport in all-oxide multiferroic t..:

Soni, Rohit ; Petraru, Adrian ; Nair, Harikrishnan S....
Nanoscale.  8 (2016)  20 - p. 10799-10805 , 2016
Link: https://doi.org/10.1039/..
 
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10

HotSpot Wizard 2.0: automated design of site-specific mutat..:

Bendl, Jaroslav ; Stourac, Jan ; Sebestova, Eva...
Nucleic Acids Research.  44 (2016)  W1 - p. W479-W487 , 2016
Link: https://doi.org/10.1093/..
 
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11

Bipolar switching polarity reversal by electrolyte layer se..:

Soni, Rohit ; Meuffels, Paul ; Petraru, Adrian...
Nanoscale.  5 (2013)  24 - p. 12598 , 2013
Link: https://doi.org/10.1039/..
 
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12

High efficiency Andreev reflection observed in Nb/Fe0.5Si0...:

Vávra, Ondrej ; Gaži, Š. ; Vávra, I...
Physica C: Superconductivity.  404 (2004)  1-4 - p. 395-399 , 2004
Link: https://doi.org/10.1016/..
 
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13

Fast digital method of critical current measurement of supe..:

Vávra, Ondrej ; Gaži, Štefan
Review of Scientific Instruments.  71 (2000)  11 - p. 4188-4191 , 2000
Link: https://doi.org/10.1063/..
 
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14

ChannelsDB 2.0: a comprehensive database of protein tunnels..:

Špačková Anna ; Vávra Ondřej ; Raček Tomáš...
https://is.muni.cz/publication/2346238.  , 2024
Link: https://is.muni.cz/publi..
 
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15

pyCaverDock: Python implementation of the popular tool for ..:

Vávra Ondřej ; Beranek Jakub ; Štourač Jan...
https://is.muni.cz/publication/2309997.  , 2023
Link: https://is.muni.cz/publi..
 
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