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Washietl, Stefan
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1

Evolutionary dynamics and tissue specificity of human long ..:

Washietl, Stefan ; Kellis, Manolis ; Garber, Manuel
Genome Research.  24 (2014)  4 - p. 616-628 , 2014
Link: https://doi.org/10.1101/..
 
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2

Genome-wide probing of RNA structure reveals active unfoldi..:

Rouskin, Silvi ; Zubradt, Meghan ; Washietl, Stefan..
Nature.  505 (2013)  7485 - p. 701-705 , 2013
Link: https://doi.org/10.1038/..
 
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3

RNA folding with soft constraints: reconciliation of probin..:

Washietl, Stefan ; Hofacker, Ivo L. ; Stadler, Peter F..
Nucleic Acids Research.  40 (2012)  10 - p. 4261-4272 , 2012
Link: https://doi.org/10.1093/..
 
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4

Computational analysis of noncoding RNAs:

Washietl, Stefan ; Will, Sebastian ; Hendrix, David A....
WIREs RNA.  3 (2012)  6 - p. 759-778 , 2012
Link: https://doi.org/10.1002/..
 
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5

New families of human regulatory RNA structures identified ..:

Parker, Brian J. ; Moltke, Ida ; Roth, Adam...
Genome Research.  21 (2011)  11 - p. 1929-1943 , 2011
Link: https://doi.org/10.1101/..
 
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6

Locating protein-coding sequences under selection for addit..:

Lin, Michael F. ; Kheradpour, Pouya ; Washietl, Stefan...
Genome Research.  21 (2011)  11 - p. 1916-1928 , 2011
Link: https://doi.org/10.1101/..
 
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7

A high-resolution map of human evolutionary constraint usin..:

Broad Institute Sequencing Platform and Whole Genome Assembly Team ; Lindblad-Toh, Kerstin ; Garber, Manuel...
Nature.  478 (2011)  7370 - p. 476-482 , 2011
Link: https://doi.org/10.1038/..
 
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8

Identification of Functional Elements and Regulatory Circui..:

Roy, Sushmita ; Ernst, Jason ; Kharchenko, Peter V....
Science.  330 (2010)  6012 - p. 1787-1797 , 2010
Link: https://www.jstor.org/st..
 
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9

Identification of Functional Elements and Regulatory Circui..:

The modENCODE Consortium ; Roy, Sushmita ; Ernst, Jason...
Science.  330 (2010)  6012 - p. 1787-1797 , 2010
Link: https://doi.org/10.1126/..
 
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10

Optimization of parameters for coverage of low molecular we..:

Müller, Stephan A. ; Kohajda, Tibor ; Findeiß, Sven...
Analytical and Bioanalytical Chemistry.  398 (2010)  7-8 - p. 2867-2881 , 2010
Link: https://doi.org/10.1007/..
 
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11

Dinucleotide controlled null models for comparative RNA gen..:

Gesell, Tanja ; Washietl, Stefan
BMC Bioinformatics.  9 (2008)  1 - p. , 2008
Link: https://doi.org/10.1186/..
 
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12

Strategies for measuring evolutionary conservation of RNA s..:

Gruber, Andreas R ; Bernhart, Stephan H ; Hofacker, Ivo L.
BMC Bioinformatics.  9 (2008)  1 - p. , 2008
Link: https://doi.org/10.1186/..
 
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13

Evolutionary footprints of nucleosome positions in yeast:

Washietl, Stefan ; Machné, Rainer ; Goldman, Nick
Trends in Genetics.  24 (2008)  12 - p. 583-587 , 2008
Link: https://doi.org/10.1016/..
 
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14

Identifying Structural Noncoding RNAs Using RNAz:

Washietl, Stefan ; L. Hofacker, Ivo
Current Protocols in Bioinformatics.  19 (2007)  1 - p. , 2007
Link: https://doi.org/10.1002/..
 
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15

Structured RNAs in the ENCODE selected regions of the human..:

Washietl, Stefan ; Pedersen, Jakob S. ; Korbel, Jan O....
Genome Research.  17 (2007)  6 - p. 852-864 , 2007
Link: https://doi.org/10.1101/..
 
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