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Weaver, Steven
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1

AUTO-TUNE: selecting the distance threshold for inferring H..:

Weaver, Steven ; Dávila Conn, Vanessa M. ; Ji, Daniel...
Frontiers in Bioinformatics.  4 (2024)  - p. , 2024
Link: https://doi.org/10.3389/..
 
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2

TopHap: rapid inference of key phylogenetic structures from..:

Caraballo-Ortiz, Marcos A ; Miura, Sayaka ; Sanderford, Maxwell...
Bioinformatics.  38 (2022)  10 - p. 2719-2726 , 2022
Link: https://doi.org/10.1093/..
 
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3

Selection Analysis Identifies Clusters of Unusual Mutationa..:

Martin, Darren P. ; Lytras, Spyros ; Lucaci, Alexander G....
Molecular Biology and Evolution.  39 (2022)  4 - p. , 2022
Link: https://doi.org/10.1093/..
 
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4

Natural selection in the evolution of SARS-CoV-2 in bats cr..:

MacLean, Oscar A. ; Lytras, Spyros ; Weaver, Steven...
PLOS Biology.  19 (2021)  3 - p. e3001115 , 2021
Link: https://doi.org/10.1371/..
 
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5

Extra base hits: Widespread empirical support for instantan..:

Lucaci, Alexander G. ; Wisotsky, Sadie R. ; Shank, Stephen D....
PLOS ONE.  16 (2021)  3 - p. e0248337 , 2021
Link: https://doi.org/10.1371/..
 
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6

Characteristics and growth of the genetic HIV transmission ..:

Dávila‐Conn, Vanessa ; García‐Morales, Claudia ; Matías‐Florentino, Margarita...
Journal of the International AIDS Society.  24 (2021)  11 - p. , 2021
Link: https://doi.org/10.1002/..
 
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7

The emergence and ongoing convergent evolution of the SARS-..:

Martin, Darren P. ; Weaver, Steven ; Tegally, Houriiyah...
Cell.  184 (2021)  20 - p. 5189-5200.e7 , 2021
Link: https://doi.org/10.1016/..
 
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8

An Evolutionary Portrait of the Progenitor SARS-CoV-2 and I..:

Kumar, Sudhir ; Tao, Qiqing ; Weaver, Steven...
Molecular Biology and Evolution.  38 (2021)  8 - p. 3046-3059 , 2021
Link: https://doi.org/10.1093/..
 
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9

Contrast-FEL—A Test for Differences in Selective Pressures ..:

Kosakovsky Pond, Sergei L ; Wisotsky, Sadie R ; Escalante, Ananias...
Molecular Biology and Evolution.  38 (2020)  3 - p. 1184-1198 , 2020
Link: https://doi.org/10.1093/..
 
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10

No more business as usual: Agile and effective responses to..:

Baker, Dannon ; van den Beek, Marius ; Blankenberg, Daniel...
PLOS Pathogens.  16 (2020)  8 - p. e1008643 , 2020
Link: https://doi.org/10.1371/..
 
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11

Evolution of Viral Genomes: Interplay Between Selection, Re..:

, In: Methods in Molecular Biology; Evolutionary Genomics,
Spielman, Stephanie J. ; Weaver, Steven ; Shank, Stephen D.... - p. 427-468 , 2019
Link: https://doi.org/10.1007/..
 
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12

HyPhy 2.5—A Customizable Platform for Evolutionary Hypothes..:

Kosakovsky Pond, Sergei L ; Poon, Art F Y ; Velazquez, Ryan...
Molecular Biology and Evolution.  37 (2019)  1 - p. 295-299 , 2019
Link: https://doi.org/10.1093/..
 
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13

Full-Length Envelope Analyzer (FLEA): A tool for longitudin..:

Eren, Kemal ; Weaver, Steven ; Ketteringham, Robert...
PLOS Computational Biology.  14 (2018)  12 - p. e1006498 , 2018
Link: https://doi.org/10.1371/..
 
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14

Datamonkey 2.0: A Modern Web Application for Characterizing..:

Weaver, Steven ; Shank, Stephen D ; Spielman, Stephanie J...
Molecular Biology and Evolution.  35 (2018)  3 - p. 773-777 , 2018
Link: https://doi.org/10.1093/..
 
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15

phylotree.js - a JavaScript library for application develop..:

Shank, Stephen D. ; Weaver, Steven ; Kosakovsky Pond, Sergei L.
BMC Bioinformatics.  19 (2018)  1 - p. , 2018
Link: https://doi.org/10.1186/..
 
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