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Wisotsky, Sadie R
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1

Extra base hits: Widespread empirical support for instantan..:

Lucaci, Alexander G. ; Wisotsky, Sadie R. ; Shank, Stephen D....
PLOS ONE.  16 (2021)  3 - p. e0248337 , 2021
Link: https://doi.org/10.1371/..
 
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2

Contrast-FEL—A Test for Differences in Selective Pressures ..:

Kosakovsky Pond, Sergei L ; Wisotsky, Sadie R ; Escalante, Ananias...
Molecular Biology and Evolution.  38 (2020)  3 - p. 1184-1198 , 2020
Link: https://doi.org/10.1093/..
 
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3

Synonymous Site-to-Site Substitution Rate Variation Dramati..:

Wisotsky, Sadie R ; Kosakovsky Pond, Sergei L ; Shank, Stephen D..
Molecular Biology and Evolution.  37 (2020)  8 - p. 2430-2439 , 2020
Link: https://doi.org/10.1093/..
 
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4

Extra base hits: Widespread empirical support for instantan..:

Alexander G Lucaci ; Sadie R Wisotsky ; Stephen D Shank..
https://doi.org/10.1371/journal.pone.0248337.  , 2021
Link: https://doi.org/10.1371/..
 
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5

Intersections of likelihood ratio test significance:

Alexander G. Lucaci (10296991) ; Sadie R. Wisotsky (10296994) ; Stephen D. Shank (5560244)..
https://figshare.com/articles/figure/Intersections_of_likelihood_ratio_test_significance_/14208799.  , 2021
Link: https://doi.org/10.1371/..
 
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6

Analysis of 13 benchmark datasets for evidence of multi-nuc..:

Alexander G. Lucaci (10296991) ; Sadie R. Wisotsky (10296994) ; Stephen D. Shank (5560244)..
https://figshare.com/articles/dataset/Analysis_of_13_benchmark_datasets_for_evidence_of_multi-nucleotide_substitutions_/14208817.  , 2021
Link: https://doi.org/10.1371/..
 
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7

Archetypal sites based on model preferences:

Alexander G. Lucaci (10296991) ; Sadie R. Wisotsky (10296994) ; Stephen D. Shank (5560244)..
https://figshare.com/articles/figure/Archetypal_sites_based_on_model_preferences_/14208796.  , 2021
Link: https://doi.org/10.1371/..
 
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8

Branch-length estimate behavior under different models:

Alexander G. Lucaci (10296991) ; Sadie R. Wisotsky (10296994) ; Stephen D. Shank (5560244)..
https://figshare.com/articles/figure/Branch-length_estimate_behavior_under_different_models_/14208790.  , 2021
Link: https://doi.org/10.1371/..
 
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9

Three-hit non-synonymous substitutions and two-hit substitu..:

Alexander G. Lucaci (10296991) ; Sadie R. Wisotsky (10296994) ; Stephen D. Shank (5560244)..
https://figshare.com/articles/figure/Three-hit_non-synonymous_substitutions_and_two-hit_substitutions_occurring_in_empirical_data_/14208808.  , 2021
Link: https://doi.org/10.1371/..
 
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10

Estimated ω rate distributions for benchmark datasets for d..:

Alexander G. Lucaci (10296991) ; Sadie R. Wisotsky (10296994) ; Stephen D. Shank (5560244)..
https://figshare.com/articles/journal_contribution/Estimated_i_i_rate_distributions_for_benchmark_datasets_for_different_models_on_the_benchmark_datasets_/14208775.  , 2021
Link: https://doi.org/10.1371/..
 
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11

Key parameters of our models:

Alexander G. Lucaci (10296991) ; Sadie R. Wisotsky (10296994) ; Stephen D. Shank (5560244)..
https://figshare.com/articles/dataset/Key_parameters_of_our_models_/14208811.  , 2021
Link: https://doi.org/10.1371/..
 
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12

The fraction of sites with strong MH model preference:

Alexander G. Lucaci (10296991) ; Sadie R. Wisotsky (10296994) ; Stephen D. Shank (5560244)..
https://figshare.com/articles/figure/The_fraction_of_sites_with_strong_MH_model_preference_/14208781.  , 2021
Link: https://doi.org/10.1371/..
 
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13

Multiple hit detection rate:

Alexander G. Lucaci (10296991) ; Sadie R. Wisotsky (10296994) ; Stephen D. Shank (5560244)..
https://figshare.com/articles/figure/Multiple_hit_detection_rate_/14208802.  , 2021
Link: https://doi.org/10.1371/..
 
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14

Indel rate verse TH rate:

Alexander G. Lucaci (10296991) ; Sadie R. Wisotsky (10296994) ; Stephen D. Shank (5560244)..
https://figshare.com/articles/figure/Indel_rate_verse_TH_rate_/14208787.  , 2021
Link: https://doi.org/10.1371/..
 
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15

Evidence for multiple hit rates in empirical datasets:

Alexander G. Lucaci (10296991) ; Sadie R. Wisotsky (10296994) ; Stephen D. Shank (5560244)..
https://figshare.com/articles/dataset/Evidence_for_multiple_hit_rates_in_empirical_datasets_/14208820.  , 2021
Link: https://doi.org/10.1371/..
 
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