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1
Extra base hits: Widespread empirical support for instantan..:
Lucaci, Alexander G. ; Wisotsky, Sadie R. ; Shank, Stephen D....
PLOS ONE. 16 (2021) 3 - p. e0248337 , 2021
PLOS ONE. 16 (2021) 3 - p. e0248337 , 2021
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2
Contrast-FEL—A Test for Differences in Selective Pressures ..:
Kosakovsky Pond, Sergei L ; Wisotsky, Sadie R ; Escalante, Ananias...
Molecular Biology and Evolution. 38 (2020) 3 - p. 1184-1198 , 2020
Molecular Biology and Evolution. 38 (2020) 3 - p. 1184-1198 , 2020
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3
Synonymous Site-to-Site Substitution Rate Variation Dramati..:
Wisotsky, Sadie R ; Kosakovsky Pond, Sergei L ; Shank, Stephen D..
Molecular Biology and Evolution. 37 (2020) 8 - p. 2430-2439 , 2020
Molecular Biology and Evolution. 37 (2020) 8 - p. 2430-2439 , 2020
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4
Extra base hits: Widespread empirical support for instantan..:
Alexander G Lucaci ; Sadie R Wisotsky ; Stephen D Shank..
https://doi.org/10.1371/journal.pone.0248337. , 2021
https://doi.org/10.1371/journal.pone.0248337. , 2021
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5
Intersections of likelihood ratio test significance:
Alexander G. Lucaci (10296991) ; Sadie R. Wisotsky (10296994) ; Stephen D. Shank (5560244)..
https://figshare.com/articles/figure/Intersections_of_likelihood_ratio_test_significance_/14208799. , 2021
https://figshare.com/articles/figure/Intersections_of_likelihood_ratio_test_significance_/14208799. , 2021
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6
Analysis of 13 benchmark datasets for evidence of multi-nuc..:
Alexander G. Lucaci (10296991) ; Sadie R. Wisotsky (10296994) ; Stephen D. Shank (5560244)..
https://figshare.com/articles/dataset/Analysis_of_13_benchmark_datasets_for_evidence_of_multi-nucleotide_substitutions_/14208817. , 2021
https://figshare.com/articles/dataset/Analysis_of_13_benchmark_datasets_for_evidence_of_multi-nucleotide_substitutions_/14208817. , 2021
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7
Archetypal sites based on model preferences:
Alexander G. Lucaci (10296991) ; Sadie R. Wisotsky (10296994) ; Stephen D. Shank (5560244)..
https://figshare.com/articles/figure/Archetypal_sites_based_on_model_preferences_/14208796. , 2021
https://figshare.com/articles/figure/Archetypal_sites_based_on_model_preferences_/14208796. , 2021
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8
Branch-length estimate behavior under different models:
Alexander G. Lucaci (10296991) ; Sadie R. Wisotsky (10296994) ; Stephen D. Shank (5560244)..
https://figshare.com/articles/figure/Branch-length_estimate_behavior_under_different_models_/14208790. , 2021
https://figshare.com/articles/figure/Branch-length_estimate_behavior_under_different_models_/14208790. , 2021
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9
Three-hit non-synonymous substitutions and two-hit substitu..:
Alexander G. Lucaci (10296991) ; Sadie R. Wisotsky (10296994) ; Stephen D. Shank (5560244)..
https://figshare.com/articles/figure/Three-hit_non-synonymous_substitutions_and_two-hit_substitutions_occurring_in_empirical_data_/14208808. , 2021
https://figshare.com/articles/figure/Three-hit_non-synonymous_substitutions_and_two-hit_substitutions_occurring_in_empirical_data_/14208808. , 2021
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10
Estimated ω rate distributions for benchmark datasets for d..:
Alexander G. Lucaci (10296991) ; Sadie R. Wisotsky (10296994) ; Stephen D. Shank (5560244)..
https://figshare.com/articles/journal_contribution/Estimated_i_i_rate_distributions_for_benchmark_datasets_for_different_models_on_the_benchmark_datasets_/14208775. , 2021
https://figshare.com/articles/journal_contribution/Estimated_i_i_rate_distributions_for_benchmark_datasets_for_different_models_on_the_benchmark_datasets_/14208775. , 2021
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11
Key parameters of our models:
Alexander G. Lucaci (10296991) ; Sadie R. Wisotsky (10296994) ; Stephen D. Shank (5560244)..
https://figshare.com/articles/dataset/Key_parameters_of_our_models_/14208811. , 2021
https://figshare.com/articles/dataset/Key_parameters_of_our_models_/14208811. , 2021
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12
The fraction of sites with strong MH model preference:
Alexander G. Lucaci (10296991) ; Sadie R. Wisotsky (10296994) ; Stephen D. Shank (5560244)..
https://figshare.com/articles/figure/The_fraction_of_sites_with_strong_MH_model_preference_/14208781. , 2021
https://figshare.com/articles/figure/The_fraction_of_sites_with_strong_MH_model_preference_/14208781. , 2021
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13
Multiple hit detection rate:
Alexander G. Lucaci (10296991) ; Sadie R. Wisotsky (10296994) ; Stephen D. Shank (5560244)..
https://figshare.com/articles/figure/Multiple_hit_detection_rate_/14208802. , 2021
https://figshare.com/articles/figure/Multiple_hit_detection_rate_/14208802. , 2021
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14
Indel rate verse TH rate:
Alexander G. Lucaci (10296991) ; Sadie R. Wisotsky (10296994) ; Stephen D. Shank (5560244)..
https://figshare.com/articles/figure/Indel_rate_verse_TH_rate_/14208787. , 2021
https://figshare.com/articles/figure/Indel_rate_verse_TH_rate_/14208787. , 2021
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15
Evidence for multiple hit rates in empirical datasets:
Alexander G. Lucaci (10296991) ; Sadie R. Wisotsky (10296994) ; Stephen D. Shank (5560244)..
https://figshare.com/articles/dataset/Evidence_for_multiple_hit_rates_in_empirical_datasets_/14208820. , 2021
https://figshare.com/articles/dataset/Evidence_for_multiple_hit_rates_in_empirical_datasets_/14208820. , 2021