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Yamaguchi, Takafumi N
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1

Glioblastoma evolution and heterogeneity from a 3D whole-tu..:

Mathur, Radhika ; Wang, Qixuan ; Schupp, Patrick G....
Cell.  187 (2024)  2 - p. 446-463.e16 , 2024
Link: https://doi.org/10.1016/..
 
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2

NFTest: automated testing of Nextflow pipelines:

Patel, Yash ; Zhu, Chenghao ; Yamaguchi, Takafumi N...
Bioinformatics.  40 (2024)  2 - p. , 2024
Link: https://doi.org/10.1093/..
 
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3

PipeVal: light-weight extensible tool for file validation:

Patel, Yash ; Beshlikyan, Arpi ; Jordan, Madison...
Bioinformatics.  40 (2024)  2 - p. , 2024
Link: https://doi.org/10.1093/..
 
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4

Oncolytic DNX-2401 virotherapy plus pembrolizumab in recurr..:

Nassiri, Farshad ; Patil, Vikas ; Yefet, Leeor S....
Nature Medicine.  29 (2023)  6 - p. 1370-1378 , 2023
Link: https://doi.org/10.1038/..
 
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5

A polygenic two-hit hypothesis for prostate cancer:

Houlahan, Kathleen E ; Livingstone, Julie ; Fox, Natalie S...
JNCI: Journal of the National Cancer Institute.  115 (2023)  4 - p. 468-472 , 2023
Link: https://doi.org/10.1093/..
 
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6

The telomere length landscape of prostate cancer:

Livingstone, Julie ; Shiah, Yu-Jia ; Yamaguchi, Takafumi N....
Nature Communications.  12 (2021)  1 - p. , 2021
Link: https://doi.org/10.1038/..
 
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7

Precision Radiotherapy: Reduction in Radiation for Orophary..:

Riaz, Nadeem ; Sherman, Eric ; Pei, Xin...
JNCI: Journal of the National Cancer Institute.  113 (2021)  6 - p. 742-751 , 2021
Link: https://doi.org/10.1093/..
 
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8

Noncoding mutations target cis-regulatory elements of the F..:

Zhou, Stanley ; Hawley, James R. ; Soares, Fraser...
Nature Communications.  11 (2020)  1 - p. , 2020
Link: https://doi.org/10.1038/..
 
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9

Molecular landmarks of tumor hypoxia across cancer types:

Bhandari, Vinayak ; Hoey, Christianne ; Liu, Lydia Y....
Nature Genetics.  51 (2019)  2 - p. 308-318 , 2019
Link: https://doi.org/10.1038/..
 
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10

The genomic landscape of metastatic castration-resistant pr..:

van Dessel, Lisanne F. ; van Riet, Job ; Smits, Minke...
Nature Communications.  10 (2019)  1 - p. , 2019
Link: https://doi.org/10.1038/..
 
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11

Germline contamination and leakage in whole genome somatic ..:

Sendorek, Dorota H. ; Caloian, Cristian ; Ellrott, Kyle...
BMC Bioinformatics.  19 (2018)  1 - p. , 2018
Link: https://doi.org/10.1186/..
 
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12

Valection: design optimization for validation and verificat..:

SMC-DNA Challenge Participants ; Cooper, Christopher I ; Yao, Delia...
BMC Bioinformatics.  19 (2018)  1 - p. , 2018
Link: https://doi.org/10.1186/..
 
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13

Cribriform and intraductal prostate cancer are associated w..:

Böttcher, René ; Kweldam, Charlotte F. ; Livingstone, Julie...
BMC Cancer.  18 (2018)  1 - p. , 2018
Link: https://doi.org/10.1186/..
 
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14

Combining accurate tumor genome simulation with crowdsourci..:

ICGC-TCGA DREAM Somatic Mutation Calling Challenge Participants ; Lee, Anna Y. ; Ewing, Adam D....
Genome Biology.  19 (2018)  1 - p. , 2018
Link: https://doi.org/10.1186/..
 
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15

The Evolutionary Landscape of Localized Prostate Cancers Dr..:

Espiritu, Shadrielle Melijah G. ; Liu, Lydia Y. ; Rubanova, Yulia...
Cell.  173 (2018)  4 - p. 1003-1013.e15 , 2018
Link: https://doi.org/10.1016/..
 
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