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Yardımcı, Galip Gürkan
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1

Multicenter integrated analysis of noncoding CRISPRi screen:

Yao, David ; Tycko, Josh ; Oh, Jin Woo...
Nature Methods.  21 (2024)  4 - p. 723-734 , 2024
Link: https://doi.org/10.1038/..
 
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2

Micelle-Formulated Juglone Effectively Targets Pancreatic C..:

Shah, Vidhi M. ; Rizvi, Syed ; Smith, Alexander...
Pharmaceutics.  15 (2023)  12 - p. 2651 , 2023
Link: https://doi.org/10.3390/..
 
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3

Accessible high-throughput single-cell whole-genome sequenc..:

Queitsch, Konstantin ; Moore, Travis W. ; O'Connell, Brendan L....
Cell Reports Methods.  3 (2023)  11 - p. 100625 , 2023
Link: https://doi.org/10.1016/..
 
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4

GoPeaks: histone modification peak calling for CUT&Tag:

Yashar, William M. ; Kong, Garth ; VanCampen, Jake...
Genome Biology.  23 (2022)  1 - p. , 2022
Link: https://doi.org/10.1186/..
 
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5

High-content single-cell combinatorial indexing:

Mulqueen, Ryan M. ; Pokholok, Dmitry ; O'Connell, Brendan L....
Nature Biotechnology.  39 (2021)  12 - p. 1574-1580 , 2021
Link: https://doi.org/10.1038/..
 
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6

Capturing cell type-specific chromatin compartment patterns..:

Kim, Hyeon-Jin ; Yardımcı, Galip Gürkan ; Bonora, Giancarlo...
PLOS Computational Biology.  16 (2020)  9 - p. e1008173 , 2020
Link: https://doi.org/10.1371/..
 
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7

Measuring the reproducibility and quality of Hi-C data:

Yardımcı, Galip Gürkan ; Ozadam, Hakan ; Sauria, Michael E. G....
Genome Biology.  20 (2019)  1 - p. , 2019
Link: https://doi.org/10.1186/..
 
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8

Unsupervised embedding of single-cell Hi-C data:

Liu, Jie ; Lin, Dejun ; Yardımcı, Galip Gürkan.
Bioinformatics.  34 (2018)  13 - p. i96-i104 , 2018
Link: https://doi.org/10.1093/..
 
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9

Integrative detection and analysis of structural variation ..:

Dixon, Jesse R. ; Xu, Jie ; Dileep, Vishnu...
Nature Genetics.  50 (2018)  10 - p. 1388-1398 , 2018
Link: https://doi.org/10.1038/..
 
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10

Computational methods for analyzing and modeling genome str..:

Lin, Dejun ; Bonora, Giancarlo ; Yardımcı, Galip Gürkan.
WIREs Systems Biology and Medicine.  11 (2018)  1 - p. , 2018
Link: https://doi.org/10.1002/..
 
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11

Software tools for visualizing Hi-C data:

Yardımcı, Galip Gürkan ; Noble, William Stafford
Genome Biology.  18 (2017)  1 - p. , 2017
Link: https://doi.org/10.1186/..
 
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12

HiCRep: assessing the reproducibility of Hi-C data using a ..:

Yang, Tao ; Zhang, Feipeng ; Yardımcı, Galip Gürkan...
Genome Research.  27 (2017)  11 - p. 1939-1949 , 2017
Link: https://doi.org/10.1101/..
 
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13

HiC-spector: a matrix library for spectral and reproducibil..:

Yan, Koon-Kiu ; Yardımcı, Galip Gürkan ; Yan, Chengfei...
Bioinformatics.  33 (2017)  14 - p. 2199-2201 , 2017
Link: https://doi.org/10.1093/..
 
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14

Transcriptional control of tissue formation throughout root..:

Moreno-Risueno, Miguel A. ; Sozzani, Rosangela ; Yardımcı, Galip Gürkan...
Science.  350 (2015)  6259 - p. 426-430 , 2015
Link: https://doi.org/10.1126/..
 
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15

Transcriptional control of tissue formation throughout root..:

Moreno-Risueno, Miguel A. ; Sozzani, Rosangela ; Yardımcı, Galip Gürkan...
Science.  350 (2015)  6259 - p. 426-430 , 2015
Link: http://www.jstor.org/sta..
 
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