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Yildirim, Ilyas
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1

Prediction of 3D RNA Structures from Sequence Using Energy ..:

Riveros, Ivan Isaac ; Yildirim, Ilyas
Journal of Chemical Theory and Computation.  20 (2024)  10 - p. 4363-4376 , 2024
Link: https://doi.org/10.1021/..
 
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2

Conformational dynamics of RNA G4C2 and G2C4 repeat expansi..:

Taghavi, Amirhossein ; Baisden, Jared T ; Childs-Disney, Jessica L..
Nucleic Acids Research.  51 (2023)  11 - p. 5325-5340 , 2023
Link: https://doi.org/10.1093/..
 
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3

Dynamic docking of small molecules targeting RNA CUG repeat..:

Wang, Kye Won ; Riveros, Ivan ; DeLoye, James.
Biophysical Journal.  122 (2023)  1 - p. 180-196 , 2023
Link: https://doi.org/10.1016/..
 
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4

Computational Investigation of Bending Properties of RNA AU..:

Taghavi, Amirhossein ; Yildirim, Ilyas
Frontiers in Molecular Biosciences.  9 (2022)  - p. , 2022
Link: https://doi.org/10.3389/..
 
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5

Evaluating Geometric Definitions of Stacking for RNA Dinucl..:

Taghavi, Amirhossein ; Riveros, Ivan ; Wales, David J..
Journal of Chemical Theory and Computation.  18 (2022)  6 - p. 3637-3653 , 2022
Link: https://doi.org/10.1021/..
 
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6

Massively Parallel Optimization of the Linker Domain in Sma..:

Vezina-Dawod, Simon ; Angelbello, Alicia J. ; Choudhary, Shruti...
ACS Medicinal Chemistry Letters.  12 (2021)  6 - p. 907-914 , 2021
Link: https://doi.org/10.1021/..
 
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7

A Small Molecule Exploits Hidden Structural Features within..:

Ursu, Andrei ; Baisden, Jared T. ; Bush, Jessica A....
ACS Chemical Neuroscience.  12 (2021)  21 - p. 4076-4089 , 2021
Link: https://doi.org/10.1021/..
 
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8

Macrocyclization of a Ligand Targeting a Toxic RNA Dramatic..:

Benhamou, Raphael I. ; Vezina‐Dawod, Simon ; Choudhary, Shruti...
ChemBioChem.  21 (2020)  22 - p. 3229-3233 , 2020
Link: https://doi.org/10.1002/..
 
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9

A general fragment-based approach to identify and optimize ..:

Suresh, Blessy M. ; Li, Weichao ; Zhang, Peiyuan...
Proceedings of the National Academy of Sciences of the United States of America.  117 (2020)  52 - p. 33197-33203 , 2020
Link: https://www.jstor.org/st..
 
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10

Structural Features of Small Molecules Targeting the RNA Re..:

Ursu, Andrei ; Wang, Kye Won ; Bush, Jessica A....
ACS Chemical Biology.  15 (2020)  12 - p. 3112-3123 , 2020
Link: https://doi.org/10.1021/..
 
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11

Small-molecule targeted recruitment of a nuclease to cleave..:

Costales, Matthew G. ; Aikawa, Haruo ; Li, Yue...
Proceedings of the National Academy of Sciences of the United States of America.  117 (2020)  5 - p. 2406-2411 , 2020
Link: https://www.jstor.org/st..
 
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12

A general fragment-based approach to identify and optimize ..:

Suresh, Blessy M. ; Li, Weichao ; Zhang, Peiyuan...
Proceedings of the National Academy of Sciences.  117 (2020)  52 - p. 33197-33203 , 2020
Link: https://doi.org/10.1073/..
 
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13

Small-molecule targeted recruitment of a nuclease to cleave..:

Costales, Matthew G. ; Aikawa, Haruo ; Li, Yue...
Proceedings of the National Academy of Sciences.  117 (2020)  5 - p. 2406-2411 , 2020
Link: https://doi.org/10.1073/..
 
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14

Computational Investigation of RNA A-Bulges Related to the ..:

Wales, David J. ; Disney, Matthew D. ; Yildirim, Ilyas
The Journal of Physical Chemistry B.  123 (2018)  1 - p. 57-65 , 2018
Link: https://doi.org/10.1021/..
 
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15

Structure and Dynamics of RNA Repeat Expansions That Cause ..:

Chen, Jonathan L. ; VanEtten, Damian M. ; Fountain, Matthew A...
Biochemistry.  56 (2017)  27 - p. 3463-3474 , 2017
Link: https://doi.org/10.1021/..
 
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