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Zhang, Ruochi
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1

MolFeSCue: enhancing molecular property prediction in data-..:

Zhang, Ruochi ; Wu, Chao ; Yang, Qian...
Bioinformatics.  40 (2024)  4 - p. , 2024
Link: https://doi.org/10.1093/..
 
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2

FairCare: Adversarial training of a heterogeneous graph neu..:

Wang, Yan ; Zhang, Ruochi ; Yang, Qian...
Information Processing & Management.  61 (2024)  3 - p. 103682 , 2024
Link: https://doi.org/10.1016/..
 
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3

scGHOST: identifying single-cell 3D genome subcompartments:

Xiong, Kyle ; Zhang, Ruochi ; Ma, Jian
Nature Methods.  , 2024
Link: https://doi.org/10.1038/..
 
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4

Optimization of binding affinities in chemical space with g..:

Xu, Xiaopeng ; Zhou, Juexiao ; Zhu, Chen...
F1000Research.  12 (2024)  - p. 757 , 2024
Link: https://doi.org/10.12688..
 
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5

HELM-GPT: de novo macrocyclic peptide design using generati..:

Xu, Xiaopeng ; Xu, Chencheng ; He, Wenjia...
Bioinformatics.  40 (2024)  6 - p. , 2024
Link: https://doi.org/10.1093/..
 
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6

Predicting the antigenic evolution of SARS-COV-2 with deep ..:

Han, Wenkai ; Chen, Ningning ; Xu, Xinzhou...
Nature Communications.  14 (2023)  1 - p. , 2023
Link: https://doi.org/10.1038/..
 
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7

OCMR: A comprehensive framework for optical chemical molecu..:

Wang, Yan ; Zhang, Ruochi ; Zhang, Shengde...
Computers in Biology and Medicine.  163 (2023)  - p. 107187 , 2023
Link: https://doi.org/10.1016/..
 
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8

Orchestrating information across tissues via a novel multit..:

Duan, Meiyu ; Wang, Yueying ; Zhao, Dong...
Briefings in Bioinformatics.  24 (2023)  4 - p. , 2023
Link: https://doi.org/10.1093/..
 
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9

AB-Gen: Antibody Library Design with Generative Pre-Trained..:

Xu, Xiaopeng ; Xu, Tiantian ; Zhou, Juexiao...
Genomics, Proteomics & Bioinformatics.  21 (2023)  5 - p. 1043-1053 , 2023
Link: https://doi.org/10.1016/..
 
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10

Optimization of binding affinities in chemical space with g..:

Xu, Xiaopeng ; Zhou, Juexiao ; Zhu, Chen...
F1000Research.  12 (2023)  - p. 757 , 2023
Link: https://doi.org/10.12688..
 
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11

A comprehensive benchmarking with practical guidelines for ..:

Li, Haoyang ; Zhou, Juexiao ; Li, Zhongxiao...
Nature Communications.  14 (2023)  1 - p. , 2023
Link: https://doi.org/10.1038/..
 
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12

Ultrafast and Interpretable Single-Cell 3D Genome Analysis ..:

, In: Lecture Notes in Computer Science; Research in Computational Molecular Biology,
Zhang, Ruochi ; Zhou, Tianming ; Ma, Jian - p. 300-301 , 2022
Link: https://doi.org/10.1007/..
 
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13

A polygenic stacking classifier revealed the complicated pl..:

Xu, Chengfeng ; Zhang, Ruochi ; Duan, Meiyu...
Molecular Therapy - Nucleic Acids.  28 (2022)  - p. 477-487 , 2022
Link: https://doi.org/10.1016/..
 
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14

Author Correction: Multiscale and integrative single-cell H..:

Zhang, Ruochi ; Zhou, Tianming ; Ma, Jian
Nature Biotechnology.  40 (2022)  3 - p. 432-432 , 2022
Link: https://doi.org/10.1038/..
 
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15

Describe Molecules by a Heterogeneous Graph Neural Network ..:

Deng, Daiguo ; Lei, Zengrong ; Hong, Xiaobin..
ACS Omega.  7 (2022)  4 - p. 3713-3721 , 2022
Link: https://doi.org/10.1021/..
 
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