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Zok, Tomasz
92  results:
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1

Knotted artifacts in predicted 3D RNA structures:

Gren, Bartosz A. ; Antczak, Maciej ; Zok, Tomasz...
PLOS Computational Biology.  20 (2024)  6 - p. e1011959 , 2024
Link: https://doi.org/10.1371/..
 
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2

New prediction categories in CASP15:

Kryshtafovych, Andriy ; Antczak, Maciej ; Szachniuk, Marta...
Proteins: Structure, Function, and Bioinformatics.  91 (2023)  12 - p. 1550-1557 , 2023
Link: https://doi.org/10.1002/..
 
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3

When will RNA get its AlphaFold moment?:

Schneider, Bohdan ; Sweeney, Blake Alexander ; Bateman, Alex...
Nucleic Acids Research.  51 (2023)  18 - p. 9522-9532 , 2023
Link: https://doi.org/10.1093/..
 
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4

WebTetrado: a webserver to explore quadruplexes in nucleic ..:

Adamczyk, Bartosz ; Zurkowski, Michal ; Szachniuk, Marta.
Nucleic Acids Research.  51 (2023)  W1 - p. W607-W612 , 2023
Link: https://doi.org/10.1093/..
 
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5

DrawTetrado to create layer diagrams of G4 structures:

Zurkowski, Michal ; Zok, Tomasz ; Szachniuk, Marta.
Bioinformatics.  38 (2022)  15 - p. 3835-3836 , 2022
Link: https://doi.org/10.1093/..
 
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6

Characterizing domain-specific open educational resources b..:

Kilpatrick, Alastair M ; Rahman, Farzana ; Anjum, Audra...
Bioinformatics.  38 (2022)  Supplement_1 - p. i19-i27 , 2022
Link: https://doi.org/10.1093/..
 
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7

RNAspider: a webserver to analyze entanglements in RNA 3D s..:

Luwanski, Kamil ; Hlushchenko, Vladyslav ; Popenda, Mariusz...
Nucleic Acids Research.  50 (2022)  W1 - p. W663-W669 , 2022
Link: https://doi.org/10.1093/..
 
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8

Computational Pipeline for Reference-Free Comparative Analy..:

Gumna, Julita ; Antczak, Maciej ; Adamiak, Ryszard W....
International Journal of Molecular Sciences.  23 (2022)  17 - p. 9630 , 2022
Link: https://doi.org/10.3390/..
 
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9

RNAloops: a database of RNA multiloops:

Wiedemann, Jakub ; Kaczor, Jacek ; Milostan, Maciej...
Bioinformatics.  38 (2022)  17 - p. 4200-4205 , 2022
Link: https://doi.org/10.1093/..
 
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10

BioCommons: a robust java library for RNA structural bioinf..:

Zok, Tomasz ; Gorodkin, Jan
Bioinformatics.  37 (2021)  17 - p. 2766-2767 , 2021
Link: https://doi.org/10.1093/..
 
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11

Entanglements of structure elements revealed in RNA 3D mode..:

Popenda, Mariusz ; Zok, Tomasz ; Sarzynska, Joanna...
Nucleic Acids Research.  49 (2021)  17 - p. 9625-9632 , 2021
Link: https://doi.org/10.1093/..
 
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12

ONQUADRO: a database of experimentally determined quadruple..:

Zok, Tomasz ; Kraszewska, Natalia ; Miskiewicz, Joanna...
Nucleic Acids Research.  50 (2021)  D1 - p. D253-D258 , 2021
Link: https://doi.org/10.1093/..
 
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13

ElTetrado: a tool for identification and classification of ..:

Zok, Tomasz ; Popenda, Mariusz ; Szachniuk, Marta
BMC Bioinformatics.  21 (2020)  1 - p. , 2020
Link: https://doi.org/10.1186/..
 
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14

Morality, protection, security and gain: lessons from a min..:

Komosinski, Maciej ; Żok, Tomasz
Foundations of Computing and Decision Sciences.  45 (2020)  1 - p. 17-33 , 2020
Link: https://doi.org/10.2478/..
 
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15

RNAthor – fast, accurate normalization, visualization and s..:

Gumna, Julita ; Zok, Tomasz ; Figurski, Kacper...
PLOS ONE.  15 (2020)  10 - p. e0239287 , 2020
Link: https://doi.org/10.1371/..
 
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