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Zomorrodi, Ali R.
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1

Novel Bacteroides Vulgatus strain protects against gluten-i..:

Tran, Tina ; Senger, Stefania ; Baldassarre, Mariella...
Pediatric Research.  95 (2024)  5 - p. 1254-1264 , 2024
Link: https://doi.org/10.1038/..
 
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2

Computational design and engineering of an Escherichia coli..:

Zomorrodi, Ali R. ; Hemez, Colin ; Arranz-Gibert, Pol...
iScience.  25 (2022)  7 - p. 104562 , 2022
Link: https://doi.org/10.1016/..
 
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3

Computational modeling of metabolism in microbial communiti..:

Colarusso, Analeigha V. ; Goodchild-Michelman, Isabella ; Rayle, Maya.
Current Opinion in Systems Biology.  26 (2021)  - p. 46-57 , 2021
Link: https://doi.org/10.1016/..
 
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4

Microbiome signatures of progression toward celiac disease ..:

Leonard, Maureen M. ; Valitutti, Francesco ; Karathia, Hiren...
Proceedings of the National Academy of Sciences.  118 (2021)  29 - p. , 2021
Link: https://doi.org/10.1073/..
 
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5

Microbiota and Metabolomic Patterns in the Breast Milk of S..:

Olshan, Katherine L. ; Zomorrodi, Ali R. ; Pujolassos, Meritxell...
Nutrients.  13 (2021)  7 - p. 2243 , 2021
Link: https://doi.org/10.3390/..
 
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6

Characterization of the blood microbiota in children with C..:

Mehrotra, Isha ; Serena, Gloria ; Cetinbas, Murat...
Current Research in Microbial Sciences.  2 (2021)  - p. 100069 , 2021
Link: https://doi.org/10.1016/..
 
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7

Multi-omics analysis reveals the influence of genetic and e..:

Leonard, Maureen M. ; Karathia, Hiren ; Pujolassos, Meritxell...
Microbiome.  8 (2020)  1 - p. , 2020
Link: https://doi.org/10.1186/..
 
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8

Genome-driven evolutionary game theory helps understand the..:

Zomorrodi, Ali R. ; Segrè, Daniel
Nature Communications.  8 (2017)  1 - p. , 2017
Link: https://doi.org/10.1038/..
 
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9

Synthetic Ecology of Microbes: Mathematical Models and Appl..:

Zomorrodi, Ali R. ; Segrè, Daniel
Journal of Molecular Biology.  428 (2016)  5 - p. 837-861 , 2016
Link: https://doi.org/10.1016/..
 
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10

Optimization methods in metabolic networks:

Maranas, Costas D ; Zomorrodi, Ali R , 2016
Link: https://onlinelibrary.wi..
 
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11

Bilevel optimization techniques in computational strain des..:

Chowdhury, Anupam ; Zomorrodi, Ali R. ; Maranas, Costas D.
Computers & Chemical Engineering.  72 (2015)  - p. 363-372 , 2015
Link: https://doi.org/10.1016/..
 
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12

d-OptCom: Dynamic Multi-level and Multi-objective Metabolic..:

Zomorrodi, Ali R. ; Islam, Mohammad Mazharul ; Maranas, Costas D.
ACS Synthetic Biology.  3 (2014)  4 - p. 247-257 , 2014
Link: https://doi.org/10.1021/..
 
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13

A kinetic model of Escherichia coli core metabolism satisfy..:

Khodayari, Ali ; Zomorrodi, Ali R. ; Liao, James C..
Metabolic Engineering.  25 (2014)  - p. 50-62 , 2014
Link: https://doi.org/10.1016/..
 
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14

k-OptForce: Integrating Kinetics with Flux Balance Analysis..:

Chowdhury, Anupam ; Zomorrodi, Ali R. ; Maranas, Costas D..
PLoS Computational Biology.  10 (2014)  2 - p. e1003487 , 2014
Link: https://doi.org/10.1371/..
 
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15

Coarse-grained optimization-driven design and piecewise lin..:

Zomorrodi, Ali R. ; Maranas, Costas D.
European Journal of Operational Research.  237 (2014)  2 - p. 665-676 , 2014
Link: https://doi.org/10.1016/..
 
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