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RNA-seq analysis pipeline based on oshell environment:

Li, Jing ; Hu, Jun ; Newman, Matthew..
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB).  11 (2014)  5 - p. 973-978 , 2014
Link: https://dl.acm.org/doi/10.1109/TCBB.2014.2321156